Variant report

Variant	rs9493304
Chromosome Location	chr6:132719507-132719508
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12333184	1.00[EUR][1000 genomes]
rs1321263	1.00[EUR][1000 genomes]
rs55842913	1.00[EUR][1000 genomes]
rs55845566	1.00[EUR][1000 genomes]
rs57190537	1.00[EUR][1000 genomes]
rs57791045	1.00[EUR][1000 genomes]
rs61306520	1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[EUR][1000 genomes]
rs7356940	1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	1.00[EUR][1000 genomes]
rs73772522	1.00[EUR][1000 genomes]
rs73772526	1.00[EUR][1000 genomes]
rs73772527	1.00[EUR][1000 genomes]
rs73772529	1.00[EUR][1000 genomes]
rs73772530	1.00[EUR][1000 genomes]
rs73772531	1.00[EUR][1000 genomes]
rs73772532	1.00[EUR][1000 genomes]
rs73772534	1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9483471	1.00[EUR][1000 genomes]
rs9493303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493307	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132713400-132720000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:132714000-132721200	Weak transcription	NH-A	brain
3	chr6:132714400-132720200	Weak transcription	Osteobl	bone
4	chr6:132714400-132720800	Weak transcription	HSMMtube	muscle
5	chr6:132714800-132721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:132715200-132721800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:132715400-132719800	Weak transcription	Lung	lung
8	chr6:132718000-132720400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:132718200-132719600	Active TSS	Fetal Kidney	kidney
10	chr6:132718400-132721000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:132718400-132721400	Weak transcription	Esophagus	oesophagus
12	chr6:132718800-132721200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132719200-132719600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:132719200-132719600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:132719200-132719800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132719200-132721400	Weak transcription	Fetal Stomach	stomach
17	chr6:132719400-132720400	Weak transcription	NHDF-Ad	bronchial
18	chr6:132719400-132720600	Weak transcription	Fetal Lung	lung
19	chr6:132719400-132720800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links