Variant report

Variant	rs9483471
Chromosome Location	chr6:132821934-132821935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132821641..132824137-chr6:132824492..132826166,2	MCF-7	breast:
2	chr6:132821429..132823264-chr6:132828762..132830437,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12333184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55842913	1.00[EUR][1000 genomes]
rs57190537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57791045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772515	1.00[AMR][1000 genomes]
rs73772522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
2	chr6:132805400-132822400	Weak transcription	NHEK	skin
3	chr6:132805800-132822600	Weak transcription	NHLF	lung
4	chr6:132811600-132826000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:132812200-132822000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:132812200-132822600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:132812600-132822000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:132812600-132822600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:132812800-132822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:132812800-132823000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:132812800-132828800	Weak transcription	Fetal Brain Male	brain
13	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:132813000-132822200	Weak transcription	Colonic Mucosa	Colon
15	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:132813200-132822000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:132813200-132822000	Weak transcription	Brain Anterior Caudate	brain
18	chr6:132813200-132826800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:132813400-132822000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:132813400-132822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:132813400-132822200	Weak transcription	Right Ventricle	heart
22	chr6:132813400-132822600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:132813400-132825400	Weak transcription	Gastric	stomach
24	chr6:132813400-132825400	Weak transcription	Pancreas	Pancrea
25	chr6:132813600-132824800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:132814800-132825600	Weak transcription	Psoas Muscle	Psoas
27	chr6:132816200-132822000	Weak transcription	Fetal Kidney	kidney
28	chr6:132816200-132822000	Weak transcription	Ovary	ovary
29	chr6:132816200-132822400	Weak transcription	HSMMtube	muscle
30	chr6:132816200-132822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:132816400-132822000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:132817200-132822400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:132817200-132822600	Weak transcription	Stomach Mucosa	stomach
34	chr6:132817400-132831800	Genic enhancers	Primary B cells from peripheral blood	blood
35	chr6:132817600-132822600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:132817800-132823400	Strong transcription	Fetal Lung	lung
37	chr6:132817800-132824800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:132818000-132823400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr6:132818000-132824800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:132818000-132824800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:132818200-132824800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:132818200-132826000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:132818200-132832400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:132818400-132824600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:132818400-132824600	Strong transcription	HSMM	muscle
46	chr6:132818400-132825000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:132818400-132825000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr6:132818600-132823800	Strong transcription	HepG2	liver
49	chr6:132818600-132824000	Strong transcription	Primary T cells from cord blood	blood
50	chr6:132818600-132824800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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