Variant report

Variant	rs73776238
Chromosome Location	chr6:132793874-132793875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132792086..132794954-chr6:132796926..132799443,2	K562	blood:
2	chr6:132793625..132797201-chr6:132800171..132802858,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12333184	1.00[EUR][1000 genomes]
rs55842913	1.00[EUR][1000 genomes]
rs55845566	1.00[EUR][1000 genomes]
rs57190537	1.00[EUR][1000 genomes]
rs57791045	1.00[EUR][1000 genomes]
rs61306520	1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[EUR][1000 genomes]
rs7356940	1.00[EUR][1000 genomes]
rs73772503	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772506	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772509	1.00[EUR][1000 genomes]
rs73772522	1.00[EUR][1000 genomes]
rs73772526	1.00[EUR][1000 genomes]
rs73772527	1.00[EUR][1000 genomes]
rs73772529	1.00[EUR][1000 genomes]
rs73772530	1.00[EUR][1000 genomes]
rs73772531	1.00[EUR][1000 genomes]
rs73772532	1.00[EUR][1000 genomes]
rs73772534	1.00[EUR][1000 genomes]
rs73776244	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483462	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483467	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483471	1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493328	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493335	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132768000-132799600	Weak transcription	Psoas Muscle	Psoas
2	chr6:132770600-132796800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:132771200-132796800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:132776000-132794600	Strong transcription	Fetal Intestine Large	intestine
5	chr6:132776800-132796800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:132777800-132794000	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr6:132778000-132799400	Weak transcription	Fetal Heart	heart
8	chr6:132778200-132810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:132779200-132794000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:132779200-132795200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr6:132779200-132795800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:132779400-132794800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:132780400-132795000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:132780600-132796200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:132781800-132794200	Strong transcription	Left Ventricle	heart
16	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
17	chr6:132784400-132799800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:132785200-132811200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:132786200-132800000	Weak transcription	Right Ventricle	heart
20	chr6:132786200-132805200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:132786600-132799400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:132786600-132799600	Weak transcription	Right Atrium	heart
23	chr6:132786800-132794000	Weak transcription	Fetal Stomach	stomach
24	chr6:132786800-132794200	Strong transcription	HSMM	muscle
25	chr6:132786800-132797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:132787200-132811800	Weak transcription	Colonic Mucosa	Colon
27	chr6:132787400-132794400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:132787600-132797200	Strong transcription	Primary B cells from cord blood	blood
29	chr6:132787600-132804800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:132787800-132794200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:132787800-132796600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:132788200-132794200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:132788400-132799800	Weak transcription	Spleen	Spleen
34	chr6:132788400-132804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:132788600-132794600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:132788600-132795400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:132788600-132795800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:132788600-132799400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr6:132788600-132800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:132788800-132799800	Weak transcription	Ovary	ovary
41	chr6:132788800-132802200	Weak transcription	NHEK	skin
42	chr6:132789000-132794600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:132789400-132796600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:132789400-132797800	Strong transcription	GM12878-XiMat	blood
45	chr6:132789400-132802200	Weak transcription	Esophagus	oesophagus
46	chr6:132789400-132811000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:132789600-132794200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:132789600-132798600	Weak transcription	Gastric	stomach
49	chr6:132789600-132804600	Weak transcription	Brain Angular Gyrus	brain
50	chr6:132789600-132804800	Weak transcription	HUVEC	blood vessel

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