Variant report

Variant	rs9493328
Chromosome Location	chr6:132796452-132796453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132793625..132797201-chr6:132800171..132802858,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs73772503	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73772506	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73776238	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73776244	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73776253	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9483461	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9483462	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9483466	0.87[AMR][1000 genomes]
rs9493320	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493322	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493324	0.87[AMR][1000 genomes]
rs9493330	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493331	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493332	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132768000-132799600	Weak transcription	Psoas Muscle	Psoas
2	chr6:132770600-132796800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:132771200-132796800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:132776800-132796800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:132778000-132799400	Weak transcription	Fetal Heart	heart
6	chr6:132778200-132810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
8	chr6:132784400-132799800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:132785200-132811200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:132786200-132800000	Weak transcription	Right Ventricle	heart
11	chr6:132786200-132805200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:132786600-132799400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:132786600-132799600	Weak transcription	Right Atrium	heart
14	chr6:132786800-132797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:132787200-132811800	Weak transcription	Colonic Mucosa	Colon
16	chr6:132787600-132797200	Strong transcription	Primary B cells from cord blood	blood
17	chr6:132787600-132804800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:132787800-132796600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:132788400-132799800	Weak transcription	Spleen	Spleen
20	chr6:132788400-132804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:132788600-132799400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr6:132788600-132800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:132788800-132799800	Weak transcription	Ovary	ovary
24	chr6:132788800-132802200	Weak transcription	NHEK	skin
25	chr6:132789400-132796600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:132789400-132797800	Strong transcription	GM12878-XiMat	blood
27	chr6:132789400-132802200	Weak transcription	Esophagus	oesophagus
28	chr6:132789400-132811000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:132789600-132798600	Weak transcription	Gastric	stomach
30	chr6:132789600-132804600	Weak transcription	Brain Angular Gyrus	brain
31	chr6:132789600-132804800	Weak transcription	HUVEC	blood vessel
32	chr6:132790000-132799600	Weak transcription	K562	blood
33	chr6:132790400-132804800	Weak transcription	HMEC	breast
34	chr6:132790600-132799800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:132791000-132811200	Weak transcription	Fetal Brain Female	brain
36	chr6:132791200-132799400	Weak transcription	Brain Substantia Nigra	brain
37	chr6:132791200-132799600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:132791200-132799800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:132791200-132799800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:132791200-132803800	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:132791200-132803800	Weak transcription	NHLF	lung
42	chr6:132791200-132809000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:132791200-132810600	Weak transcription	Aorta	Aorta
44	chr6:132791200-132810600	Weak transcription	Lung	lung
45	chr6:132791200-132811200	Weak transcription	Pancreas	Pancrea
46	chr6:132791200-132813000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
48	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:132791400-132803400	Weak transcription	Fetal Kidney	kidney
50	chr6:132791400-132804800	Weak transcription	Muscle Satellite Cultured Cells	--

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