Variant report

Variant	rs73772503
Chromosome Location	chr6:132813802-132813803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132812441..132815118-chr6:132816050..132818688,2	K562	blood:
2	chr6:132812031..132814211-chr6:133136087..133138288,2	MCF-7	breast:
3	chr6:132811435..132814144-chr6:132814789..132817524,2	K562	blood:

Variant related genes	Relation type
ENSG00000206754	Chromatin interaction
ENSG00000221500	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12333184	1.00[EUR][1000 genomes]
rs55842913	1.00[EUR][1000 genomes]
rs55845566	1.00[EUR][1000 genomes]
rs57190537	1.00[EUR][1000 genomes]
rs57791045	1.00[EUR][1000 genomes]
rs61306520	1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[EUR][1000 genomes]
rs7356940	1.00[EUR][1000 genomes]
rs73772506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772509	1.00[EUR][1000 genomes]
rs73772522	1.00[EUR][1000 genomes]
rs73772526	1.00[EUR][1000 genomes]
rs73772527	1.00[EUR][1000 genomes]
rs73772529	1.00[EUR][1000 genomes]
rs73772530	1.00[EUR][1000 genomes]
rs73772531	1.00[EUR][1000 genomes]
rs73772532	1.00[EUR][1000 genomes]
rs73772534	1.00[EUR][1000 genomes]
rs73776238	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483467	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483471	1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493328	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493335	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
2	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132791800-132814800	Weak transcription	HSMMtube	muscle
5	chr6:132793200-132814800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:132793200-132818000	Weak transcription	HepG2	liver
7	chr6:132804400-132814600	Weak transcription	Fetal Lung	lung
8	chr6:132804400-132820800	Weak transcription	Fetal Stomach	stomach
9	chr6:132805400-132814200	Weak transcription	Fetal Kidney	kidney
10	chr6:132805400-132818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132805400-132819000	Weak transcription	HMEC	breast
12	chr6:132805400-132820000	Weak transcription	Liver	Liver
13	chr6:132805400-132822400	Weak transcription	NHEK	skin
14	chr6:132805800-132815600	Weak transcription	HSMM	muscle
15	chr6:132805800-132822600	Weak transcription	NHLF	lung
16	chr6:132810000-132814800	Strong transcription	Fetal Intestine Small	intestine
17	chr6:132811000-132820400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:132811400-132815800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:132811600-132815800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:132811600-132826000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:132811800-132814200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:132811800-132814600	Weak transcription	Dnd41	blood
24	chr6:132811800-132816400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:132812000-132816000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:132812200-132814600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:132812200-132814600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:132812200-132815600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:132812200-132818800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:132812200-132819800	Weak transcription	Small Intestine	intestine
31	chr6:132812200-132820200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:132812200-132821000	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:132812200-132821200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:132812200-132822000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:132812200-132822600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:132812400-132821000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:132812600-132814400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:132812600-132815800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:132812600-132818600	Weak transcription	Primary T cells from cord blood	blood
40	chr6:132812600-132820000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:132812600-132822000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:132812600-132822600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:132812800-132816000	Genic enhancers	Primary B cells from peripheral blood	blood
44	chr6:132812800-132817000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:132812800-132822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:132812800-132823000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:132812800-132828800	Weak transcription	Fetal Brain Male	brain
48	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:132813000-132814200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:132813000-132814800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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