Variant report

Variant	rs9493307
Chromosome Location	chr6:132724620-132724621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12333184	1.00[EUR][1000 genomes]
rs1321263	1.00[EUR][1000 genomes]
rs55842913	1.00[EUR][1000 genomes]
rs55845566	1.00[EUR][1000 genomes]
rs57190537	1.00[EUR][1000 genomes]
rs57791045	1.00[EUR][1000 genomes]
rs61306520	1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[EUR][1000 genomes]
rs7356940	1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	1.00[EUR][1000 genomes]
rs73772522	1.00[EUR][1000 genomes]
rs73772526	1.00[EUR][1000 genomes]
rs73772527	1.00[EUR][1000 genomes]
rs73772529	1.00[EUR][1000 genomes]
rs73772530	1.00[EUR][1000 genomes]
rs73772531	1.00[EUR][1000 genomes]
rs73772532	1.00[EUR][1000 genomes]
rs73772534	1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9483471	1.00[EUR][1000 genomes]
rs9493303	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493304	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132723400-132725000	Weak transcription	NHLF	lung
2	chr6:132723400-132725200	Weak transcription	NH-A	brain
3	chr6:132723400-132725600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:132723400-132725800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132723400-132726000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132723400-132726000	Weak transcription	HSMM	muscle
7	chr6:132723400-132726600	Enhancers	NHDF-Ad	bronchial
8	chr6:132723600-132725400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132724200-132727800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:132724400-132725200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132724400-132726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132724600-132724800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:132724600-132724800	Flanking Active TSS	Fetal Kidney	kidney
14	chr6:132724600-132725000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:132724600-132727000	Flanking Active TSS	GM12878-XiMat	blood

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