Variant report

Variant	rs9493322
Chromosome Location	chr6:132772588-132772589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12333184	1.00[EUR][1000 genomes]
rs55842913	1.00[EUR][1000 genomes]
rs55845566	1.00[EUR][1000 genomes]
rs57190537	1.00[EUR][1000 genomes]
rs57791045	1.00[EUR][1000 genomes]
rs61306520	1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[EUR][1000 genomes]
rs7356940	1.00[EUR][1000 genomes]
rs73772503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772509	1.00[EUR][1000 genomes]
rs73772522	1.00[EUR][1000 genomes]
rs73772526	1.00[EUR][1000 genomes]
rs73772527	1.00[EUR][1000 genomes]
rs73772529	1.00[EUR][1000 genomes]
rs73772530	1.00[EUR][1000 genomes]
rs73772531	1.00[EUR][1000 genomes]
rs73772532	1.00[EUR][1000 genomes]
rs73772534	1.00[EUR][1000 genomes]
rs73776238	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776244	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483462	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483467	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483471	1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493328	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9493330	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493331	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493332	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493335	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132762600-132778000	Weak transcription	Aorta	Aorta
2	chr6:132762600-132778000	Weak transcription	Gastric	stomach
3	chr6:132764000-132774600	Weak transcription	Fetal Lung	lung
4	chr6:132764200-132774800	Weak transcription	Placenta	Placenta
5	chr6:132764400-132780200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:132764600-132776600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:132764600-132779400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:132764800-132774600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:132764800-132777800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:132765000-132777000	Weak transcription	Left Ventricle	heart
11	chr6:132765400-132777400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:132765400-132779200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:132765400-132780200	Weak transcription	Fetal Brain Female	brain
14	chr6:132765400-132782400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:132765600-132780000	Weak transcription	Pancreas	Pancrea
16	chr6:132765600-132791000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:132765800-132776600	Weak transcription	HUVEC	blood vessel
18	chr6:132766400-132779200	Weak transcription	Lung	lung
19	chr6:132766600-132779200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:132766600-132792400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:132766800-132779600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:132767000-132774800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:132767200-132779200	Weak transcription	NHEK	skin
24	chr6:132767400-132773200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:132767400-132778400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:132767600-132780200	Weak transcription	HMEC	breast
27	chr6:132767800-132776400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:132768000-132776600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:132768000-132777800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:132768000-132778000	Weak transcription	Brain Substantia Nigra	brain
31	chr6:132768000-132779200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:132768000-132779200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:132768000-132799600	Weak transcription	Psoas Muscle	Psoas
34	chr6:132768200-132773200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:132768200-132774400	Weak transcription	HSMM	muscle
36	chr6:132768200-132776400	Weak transcription	NH-A	brain
37	chr6:132768200-132777200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:132768200-132777800	Weak transcription	NHLF	lung
39	chr6:132768200-132778000	Weak transcription	Fetal Intestine Small	intestine
40	chr6:132768200-132778200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:132768200-132779000	Weak transcription	Osteobl	bone
42	chr6:132768200-132780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:132768200-132782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:132768200-132783200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:132768400-132777200	Weak transcription	NHDF-Ad	bronchial
46	chr6:132768600-132773200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:132768600-132777800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:132768800-132777600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:132769400-132777000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:132769600-132776600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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