Variant report

Variant	rs9493249
Chromosome Location	chr6:132570727-132570728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13437273	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9483381	1.00[YRI][hapmap]
rs9493234	1.00[YRI][hapmap]
rs9493246	1.00[YRI][hapmap]
rs9493252	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9493254	1.00[YRI][hapmap]
rs9493255	1.00[AFR][1000 genomes]
rs9493260	1.00[YRI][hapmap]
rs9493265	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132567600-132573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:132568800-132572400	Weak transcription	NHEK	skin
3	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:132570600-132570800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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