Variant report

Variant	rs9493246
Chromosome Location	chr6:132554665-132554666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13437273	1.00[YRI][hapmap]
rs9483381	1.00[YRI][hapmap]
rs9483416	1.00[AFR][1000 genomes]
rs9483424	0.83[AFR][1000 genomes]
rs9493234	1.00[YRI][hapmap]
rs9493242	1.00[AFR][1000 genomes]
rs9493245	1.00[AFR][1000 genomes]
rs9493249	1.00[YRI][hapmap]
rs9493252	1.00[YRI][hapmap]
rs9493254	1.00[YRI][hapmap]
rs9493260	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132549400-132556000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:132550800-132555600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:132550800-132557000	Weak transcription	NH-A	brain
4	chr6:132551000-132555600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:132552200-132562400	Weak transcription	Psoas Muscle	Psoas
6	chr6:132552800-132556600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:132552800-132556800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:132553000-132555600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:132553000-132557600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:132553800-132557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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