Variant report

Variant	rs9493245
Chromosome Location	chr6:132548872-132548873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9483416	1.00[AFR][1000 genomes]
rs9483424	0.83[AFR][1000 genomes]
rs9493242	1.00[AFR][1000 genomes]
rs9493246	1.00[AFR][1000 genomes]
rs9493260	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132548000-132550800	Enhancers	Osteobl	bone
2	chr6:132548400-132549200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:132548400-132549400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:132548800-132549400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:132548800-132549400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:132548800-132549400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:132548800-132550800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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