Variant report

Variant	rs9493240
Chromosome Location	chr6:132534887-132534888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1321278	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1321279	0.81[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1406939	0.81[CEU][hapmap];0.84[ASN][1000 genomes]
rs1406940	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs1535196	0.83[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1535197	0.82[JPT][hapmap]
rs4142807	0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4142808	0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6569777	0.83[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7742430	0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7760956	0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7761388	0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9402390	0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9483414	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs9493239	0.81[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132532000-132535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:132532200-132537200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:132532400-132536000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:132532600-132537200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:132534200-132536000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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