Variant report

Variant	rs1321279
Chromosome Location	chr6:132539516-132539517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132236129..132236633-chr6:132539268..132539863,2	MCF-7	breast:
2	6:132269655-132282174..6:132539300-132542380	GM12878	blood:
3	chr6:132270712..132271805-chr6:132538854..132539933,3	MCF-7	breast:
4	6:132182612-132191683..6:132539300-132542380	Hela-S3	cervix:
5	chr6:132529971..132530664-chr6:132539012..132539738,2	MCF-7	breast:
6	chr6:132281702..132282383-chr6:132538997..132539850,2	MCF-7	breast:
7	chr6:132244206..132244737-chr6:132538982..132539610,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1321261	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs1321278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321280	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs1406935	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs1406939	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1406940	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1535196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535197	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs3927419	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs4142807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935755	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs7739344	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs7739499	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs7742430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760956	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761388	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375866	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs9385597	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs9388967	0.86[JPT][hapmap]
rs9402390	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402391	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs9483414	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493239	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493240	0.81[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132537400-132541000	Weak transcription	Osteobl	bone
2	chr6:132539000-132539800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132539000-132539800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:132539000-132541400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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