Variant report

Variant	rs9388967
Chromosome Location	chr6:132574067-132574068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132182612-132191683..6:132564401-132574898	Hela-S3	cervix:
2	6:132269655-132282174..6:132564401-132574898	GM12878	blood:
3	6:132176847-132180372..6:132564401-132574898	K562	blood:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1321261	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321279	0.86[JPT][hapmap]
rs1321280	0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1406932	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1406935	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1406940	0.84[JPT][hapmap]
rs1535196	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs1535197	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1535198	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2223375	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3927419	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4142807	0.86[JPT][hapmap]
rs4142808	0.85[JPT][hapmap]
rs6569777	0.85[JPT][hapmap]
rs6569779	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569788	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6933036	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935755	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739344	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739499	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742430	0.86[JPT][hapmap]
rs7760956	0.86[JPT][hapmap]
rs9375866	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385597	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402390	0.90[JPT][hapmap]
rs9402391	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402392	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9483414	0.81[JPT][hapmap]
rs9493239	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132573400-132575800	Enhancers	NHDF-Ad	bronchial
3	chr6:132573600-132575200	Weak transcription	Aorta	Aorta
4	chr6:132574000-132575200	Weak transcription	HMEC	breast

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