Variant report

Variant	rs6569788
Chromosome Location	chr6:132600719-132600720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132594092..132595874-chr6:132598411..132600754,3	K562	blood:
2	chr6:132244575..132245533-chr6:132600360..132601264,2	K562	blood:
3	chr6:132600387..132601705-chr6:132618997..132620734,23	MCF-7	breast:
4	chr6:132600529..132601845-chr6:132804524..132806236,14	K562	blood:
5	chr6:132600583..132601349-chr6:132778013..132778560,2	MCF-7	breast:
6	chr6:132600578..132601379-chr6:133089188..133089939,2	K562	blood:
7	chr6:132600646..132601168-chr6:132616048..132617057,3	MCF-7	breast:
8	chr6:132600647..132601321-chr6:132619115..132620190,4	MCF-7	breast:
9	chr6:132600489..132601319-chr6:132621500..132622187,2	MCF-7	breast:
10	chr6:132600570..132601283-chr6:132713650..132714534,4	K562	blood:
11	chr6:132600341..132601375-chr6:132804919..132806038,7	MCF-7	breast:
12	chr6:132236051..132236975-chr6:132600551..132601128,2	K562	blood:
13	chr6:132600674..132601355-chr6:132713689..132714612,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1321261	0.84[EUR][1000 genomes]
rs1406932	0.84[EUR][1000 genomes]
rs1406935	0.83[EUR][1000 genomes]
rs2223375	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569779	0.82[EUR][1000 genomes]
rs6933036	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6935755	0.83[EUR][1000 genomes]
rs7739344	0.81[EUR][1000 genomes]
rs9375866	0.83[EUR][1000 genomes]
rs9385597	0.83[EUR][1000 genomes]
rs9388967	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9402391	0.84[EUR][1000 genomes]
rs9402392	0.83[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132596600-132600800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:132596600-132600800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:132596800-132600800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:132596800-132600800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:132597000-132600800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132597000-132600800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132597000-132600800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:132597000-132600800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:132597000-132600800	Weak transcription	Stomach Mucosa	stomach
10	chr6:132597400-132600800	Weak transcription	Fetal Intestine Small	intestine
11	chr6:132599000-132600800	Weak transcription	Fetal Brain Female	brain
12	chr6:132599200-132600800	Weak transcription	Fetal Brain Male	brain
13	chr6:132600600-132600800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:132600600-132600800	Enhancers	Dnd41	blood
15	chr6:132600600-132601000	Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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