Variant report

Variant	rs6933036
Chromosome Location	chr6:132594152-132594153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132594092..132595874-chr6:132598411..132600754,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAAR8-2	chr6:132593121-132594471	NONHSAT114964

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1321261	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1321279	0.85[JPT][hapmap]
rs1321280	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1406932	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1406935	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1406940	0.83[JPT][hapmap]
rs1535196	0.85[JPT][hapmap]
rs1535197	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1535198	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2223375	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3927419	0.95[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4142807	0.84[JPT][hapmap]
rs4142808	0.84[JPT][hapmap]
rs6569777	0.84[JPT][hapmap]
rs6569779	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569788	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6935755	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7739344	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7739499	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742430	0.85[JPT][hapmap]
rs7760956	0.85[JPT][hapmap]
rs9375866	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9385597	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388967	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402390	0.89[JPT][hapmap]
rs9402391	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9402392	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9483414	0.84[JPT][hapmap]
rs9493239	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970165	chr6:132593252-132594252	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132589600-132595800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:132590000-132595400	Weak transcription	Aorta	Aorta
3	chr6:132592400-132596000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:132592600-132595400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:132592600-132595400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:132592600-132595600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:132592600-132595800	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:132592600-132596400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:132592800-132595400	Weak transcription	Stomach Mucosa	stomach
10	chr6:132593400-132594200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:132594000-132595800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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