Variant report

Variant	rs9402392
Chromosome Location	chr6:132556288-132556289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1321261	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321280	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1406932	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1406935	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1535197	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535198	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3927419	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569779	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569788	0.83[EUR][1000 genomes]
rs6933036	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6935755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7739344	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739499	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375866	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385597	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388967	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402391	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132550800-132557000	Weak transcription	NH-A	brain
2	chr6:132552200-132562400	Weak transcription	Psoas Muscle	Psoas
3	chr6:132552800-132556600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:132552800-132556800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:132553000-132557600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:132553800-132557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:132555400-132556400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:132555400-132556800	Weak transcription	HMEC	breast
9	chr6:132555600-132556600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:132555600-132558200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:132555600-132558400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:132555800-132557600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:132556000-132557000	Weak transcription	HSMM	muscle
14	chr6:132556000-132557200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:132556200-132557200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:132556200-132558000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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