Variant report

Variant	rs9493715
Chromosome Location	chr6:134058533-134058534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28565956	0.81[AFR][1000 genomes]
rs6935815	0.97[AFR][1000 genomes]
rs9483609	0.95[AFR][1000 genomes]
rs9483611	0.93[AFR][1000 genomes]
rs9493693	0.81[AFR][1000 genomes]
rs9493700	0.86[AFR][1000 genomes]
rs9493709	0.83[AFR][1000 genomes]
rs9493711	0.97[AFR][1000 genomes]
rs9493717	0.93[AFR][1000 genomes]
rs9493718	1.00[AFR][1000 genomes]
rs9493725	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134052800-134061400	Weak transcription	Fetal Kidney	kidney
2	chr6:134058000-134061600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:134058400-134059200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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