Variant report

Variant	rs9493718
Chromosome Location	chr6:134062682-134062683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28565956	0.81[AFR][1000 genomes]
rs6935815	0.97[AFR][1000 genomes]
rs9483609	0.95[AFR][1000 genomes]
rs9483611	0.93[AFR][1000 genomes]
rs9493693	0.81[AFR][1000 genomes]
rs9493700	0.86[AFR][1000 genomes]
rs9493709	0.83[AFR][1000 genomes]
rs9493711	0.97[AFR][1000 genomes]
rs9493715	1.00[AFR][1000 genomes]
rs9493717	0.93[AFR][1000 genomes]
rs9493725	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134059400-134066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:134061400-134063000	Enhancers	Fetal Kidney	kidney
3	chr6:134061400-134063200	Enhancers	Fetal Muscle Leg	muscle
4	chr6:134061600-134063000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:134061600-134063200	Enhancers	HSMM	muscle
6	chr6:134061800-134063000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:134061800-134063000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:134061800-134063000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:134061800-134063000	Enhancers	NHDF-Ad	bronchial
10	chr6:134062000-134063200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:134062200-134063000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:134062200-134063000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:134062200-134063200	Enhancers	HSMMtube	muscle
14	chr6:134062400-134062800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:134062400-134063000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:134062400-134063000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:134062400-134063000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:134062400-134063000	Enhancers	Adipose Nuclei	Adipose
19	chr6:134062400-134063000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:134062400-134063000	Flanking Active TSS	A549	lung
21	chr6:134062400-134063000	Flanking Active TSS	Hela-S3	cervix
22	chr6:134062400-134063400	Enhancers	Fetal Stomach	stomach
23	chr6:134062400-134063600	Enhancers	Fetal Lung	lung
24	chr6:134062600-134063000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr6:134062600-134063000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:134062600-134063000	Enhancers	Ovary	ovary
27	chr6:134062600-134063000	Flanking Active TSS	K562	blood
28	chr6:134062600-134063000	Enhancers	Osteobl	bone

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