Variant report

Variant	rs9495480
Chromosome Location	chr6:139764658-139764659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139754348..139756927-chr6:139762394..139767800,8	K562	blood:
3	chr6:139747942..139750604-chr6:139763994..139765795,2	K562	blood:
4	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
5	chr6:139762168..139766688-chr6:139768523..139772512,5	K562	blood:
6	chr3:69374544..69375213-chr6:139764292..139765130,2	MCF-7	breast:
7	chr6:139763145..139764911-chr6:139778606..139780976,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

rs_ID	r²[population]
rs9484275	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484276	0.92[YRI][hapmap]
rs9495481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495482	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495487	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:139761000-139764800	Weak transcription	Fetal Stomach	stomach
3	chr6:139761000-139766000	Weak transcription	Fetal Lung	lung
4	chr6:139763000-139765600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:139763000-139767600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:139763200-139765200	Flanking Active TSS	K562	blood
7	chr6:139763200-139765400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:139763400-139766200	Enhancers	Placenta	Placenta
9	chr6:139763800-139765000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:139763800-139765600	Enhancers	NHDF-Ad	bronchial
11	chr6:139764000-139765000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:139764000-139765200	Enhancers	NHLF	lung
13	chr6:139764000-139765400	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:139764000-139766800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:139764200-139765200	Enhancers	Fetal Kidney	kidney
16	chr6:139764200-139765200	Enhancers	NHEK	skin
17	chr6:139764400-139764800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:139764400-139764800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:139764400-139764800	Enhancers	NH-A	brain
20	chr6:139764400-139765000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:139764400-139765000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr6:139764600-139764800	Active TSS	Ovary	ovary
23	chr6:139764600-139765000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:139764600-139765000	Enhancers	Fetal Muscle Leg	muscle
25	chr6:139764600-139765200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:139764600-139765200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:139764600-139765200	Enhancers	HSMM	muscle

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