Variant report

Variant	rs9495487
Chromosome Location	chr6:139773430-139773431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139746639..139749113-chr6:139772562..139774559,2	K562	blood:
3	chr6:139773415..139775962-chr6:140133812..140135963,2	K562	blood:
4	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
5	chr6:139766736..139768408-chr6:139772895..139775718,3	K562	blood:
6	chr6:139694047..139695995-chr6:139771490..139773794,2	MCF-7	breast:
7	chr6:139773028..139775843-chr6:139903683..139906144,2	K562	blood:
8	chr6:139771786..139774405-chr6:139971662..139973387,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9484275	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495480	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495482	0.87[ASW][hapmap];1.00[GIH][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139768200-139774000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:139770600-139773600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:139771400-139773800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:139771800-139773600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:139771800-139774400	Weak transcription	Fetal Kidney	kidney
6	chr6:139772800-139774000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:139773000-139774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:139773200-139773800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:139773200-139774000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:139773200-139774000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:139773200-139774000	Enhancers	K562	blood
12	chr6:139773200-139774200	Enhancers	HUVEC	blood vessel
13	chr6:139773200-139774400	Enhancers	NHEK	skin
14	chr6:139773200-139774600	Enhancers	Hela-S3	cervix
15	chr6:139773400-139773600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:139773400-139773800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:139773400-139773800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:139773400-139773800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:139773400-139773800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:139773400-139774000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:139773400-139774000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:139773400-139774000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:139773400-139774000	Enhancers	Ovary	ovary
24	chr6:139773400-139774000	Enhancers	HSMMtube	muscle
25	chr6:139773400-139774600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:139773400-139774600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links