Variant report

Variant	rs9495491
Chromosome Location	chr6:139798160-139798161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693565..139697388-chr6:139794842..139800531,8	K562	blood:
2	chr6:139786016..139787706-chr6:139797791..139799773,2	MCF-7	breast:
3	chr6:139797675..139799727-chr6:139800146..139801985,2	K562	blood:
4	chr6:139797780..139800668-chr6:139802147..139805671,5	K562	blood:
5	chr6:139693348..139695724-chr6:139794532..139798166,3	K562	blood:
6	chr6:139795946..139798274-chr6:139802764..139804469,2	MCF-7	breast:
7	chr6:139794045..139795703-chr6:139798060..139801025,2	MCF-7	breast:
8	chr6:139788753..139790765-chr6:139796325..139798435,2	K562	blood:
9	chr6:139797780..139799711-chr6:139803256..139805008,2	K562	blood:
10	chr6:139793418..139795524-chr6:139796922..139799226,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction
ENSG00000238099	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17068707	0.83[AMR][1000 genomes]
rs9495492	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139794000-139799800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:139795800-139799800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:139795800-139799800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:139795800-139799800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:139796000-139799400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:139796200-139799400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:139796200-139800600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:139796600-139800600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:139796600-139800800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:139796800-139798400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:139796800-139799000	Enhancers	K562	blood
12	chr6:139796800-139800600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:139796800-139800800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:139796800-139800800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:139796800-139800800	Weak transcription	Liver	Liver
16	chr6:139796800-139801000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:139796800-139806600	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:139797000-139798800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:139797000-139806800	Weak transcription	Fetal Lung	lung
20	chr6:139797200-139798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:139797200-139800400	Weak transcription	Fetal Stomach	stomach
22	chr6:139797200-139803200	Weak transcription	Fetal Kidney	kidney
23	chr6:139797600-139798600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:139797600-139798600	Enhancers	Fetal Intestine Small	intestine
25	chr6:139797600-139799200	Enhancers	Brain Germinal Matrix	brain
26	chr6:139797600-139803400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:139797800-139799000	Enhancers	HepG2	liver
28	chr6:139797800-139799600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:139797800-139803000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:139798000-139798800	Enhancers	Fetal Intestine Large	intestine
31	chr6:139798000-139801200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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