Variant report

Variant	rs17068707
Chromosome Location	chr6:139791257-139791258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CITED2-1	chr6:139790132-139791597	XLOC_005856

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9484276	1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs9495480	0.91[YRI][hapmap]
rs9495482	0.91[YRI][hapmap]
rs9495491	0.83[AMR][1000 genomes]
rs9495492	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139788400-139793600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:139789600-139793400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:139789600-139794000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:139789800-139793400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:139789800-139793600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:139789800-139793600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:139789800-139793600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:139789800-139793600	Weak transcription	HSMMtube	muscle
9	chr6:139789800-139793800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:139789800-139794000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:139789800-139794000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:139789800-139794400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:139789800-139794400	Weak transcription	HMEC	breast
14	chr6:139789800-139794600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:139790000-139793600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:139790000-139793600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:139790000-139793600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:139790000-139793600	Weak transcription	Fetal Lung	lung
19	chr6:139790000-139793800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:139790000-139793800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:139790000-139794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:139790000-139794000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:139790000-139794000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:139790000-139794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:139790000-139794400	Weak transcription	Fetal Heart	heart
26	chr6:139790000-139795000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:139790200-139793600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:139790200-139793800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:139790200-139794200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:139790600-139793400	Weak transcription	Fetal Kidney	kidney
31	chr6:139790600-139793600	Weak transcription	NHEK	skin
32	chr6:139790800-139793600	Weak transcription	Adipose Nuclei	Adipose
33	chr6:139790800-139794000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:139791000-139791400	Enhancers	Ovary	ovary
35	chr6:139791000-139791400	Enhancers	K562	blood
36	chr6:139791200-139791400	Enhancers	Liver	Liver

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