Variant report

Variant	rs9496517
Chromosome Location	chr6:143410044-143410045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28532630	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937139	1.00[AMR][1000 genomes]
rs9484702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484704	1.00[AMR][1000 genomes]
rs9484707	1.00[AMR][1000 genomes]
rs9484708	1.00[AMR][1000 genomes]
rs9496508	1.00[AMR][1000 genomes]
rs9496509	1.00[AMR][1000 genomes]
rs9496510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496520	1.00[AMR][1000 genomes]
rs9496522	1.00[AMR][1000 genomes]
rs9496526	1.00[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143389800-143418800	Weak transcription	Osteobl	bone
5	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143397400-143431600	Weak transcription	HMEC	breast
7	chr6:143402000-143412000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:143402200-143418400	Weak transcription	K562	blood
9	chr6:143403200-143417400	Weak transcription	Stomach Mucosa	stomach
10	chr6:143404000-143411600	Weak transcription	Liver	Liver
11	chr6:143404000-143417800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:143404000-143422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143408200-143418600	Weak transcription	Left Ventricle	heart
14	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
15	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
16	chr6:143408800-143411800	Weak transcription	Psoas Muscle	Psoas
17	chr6:143408800-143417200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143409800-143413600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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