Variant report

Variant	rs9496520
Chromosome Location	chr6:143426326-143426327
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143424126..143427059-chr6:143431274..143435341,4	K562	blood:

rs_ID	r²[population]
rs28532630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927594	0.89[MKK][hapmap];1.00[AMR][1000 genomes]
rs6937139	1.00[AMR][1000 genomes]
rs9484702	1.00[AMR][1000 genomes]
rs9484703	1.00[AMR][1000 genomes]
rs9484704	1.00[AMR][1000 genomes]
rs9484707	1.00[AMR][1000 genomes]
rs9484708	1.00[AMR][1000 genomes]
rs9496508	1.00[AMR][1000 genomes]
rs9496509	1.00[AMR][1000 genomes]
rs9496510	1.00[AMR][1000 genomes]
rs9496512	1.00[AMR][1000 genomes]
rs9496513	1.00[AMR][1000 genomes]
rs9496517	1.00[AMR][1000 genomes]
rs9496519	1.00[AMR][1000 genomes]
rs9496522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496537	1.00[JPT][hapmap]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143397400-143431600	Weak transcription	HMEC	breast
6	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
7	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
8	chr6:143417800-143427600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:143419000-143427000	Weak transcription	Spleen	Spleen
11	chr6:143419200-143427800	Weak transcription	Small Intestine	intestine
12	chr6:143419400-143427400	Weak transcription	K562	blood
13	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:143421400-143427400	Weak transcription	Liver	Liver
16	chr6:143421400-143428600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:143424000-143427600	Weak transcription	HepG2	liver
19	chr6:143424600-143427000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:143425000-143426600	Enhancers	Psoas Muscle	Psoas
21	chr6:143425000-143432600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:143425200-143429200	Weak transcription	HSMMtube	muscle
23	chr6:143425800-143429600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:143426000-143427200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:143426000-143428200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:143426200-143426400	Enhancers	NH-A	brain
27	chr6:143426200-143427200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain

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