Variant report

Variant	rs9496536
Chromosome Location	chr6:143515699-143515700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143500149..143502604-chr6:143514683..143517132,3	K562	blood:
2	chr6:143515015..143517690-chr6:143543085..143544617,2	K562	blood:
3	chr6:143500149..143502604-chr6:143514683..143516701,2	K562	blood:
4	chr6:143514700..143516541-chr6:143535593..143537913,2	K562	blood:
5	chr6:143515436..143519922-chr6:143520164..143527026,9	K562	blood:
6	chr6:143514687..143516839-chr6:143523728..143526695,2	MCF-7	breast:
7	chr6:143496807..143499079-chr6:143513630..143516083,2	K562	blood:
8	chr6:143367740..143370154-chr6:143514749..143517597,2	K562	blood:

No data

rs_ID	r²[population]
rs56969503	1.00[AMR][1000 genomes]
rs6570554	1.00[MEX][hapmap]
rs6935733	1.00[MEX][hapmap]
rs7771499	1.00[MEX][hapmap]
rs9321885	1.00[AMR][1000 genomes]
rs9496537	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496563	1.00[MEX][hapmap]
rs9496598	1.00[AMR][1000 genomes]
rs9496611	1.00[AMR][1000 genomes]

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:143479600-143534600	Weak transcription	Gastric	stomach
4	chr6:143484400-143519800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:143487000-143516600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:143487600-143518000	Weak transcription	Fetal Kidney	kidney
7	chr6:143497400-143518600	Weak transcription	Pancreas	Pancrea
8	chr6:143497800-143522800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:143498000-143517800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:143499200-143525400	Weak transcription	Esophagus	oesophagus
12	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143499400-143516800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:143499400-143520800	Weak transcription	Lung	lung
15	chr6:143500400-143515800	Strong transcription	K562	blood
16	chr6:143501400-143516600	Weak transcription	Psoas Muscle	Psoas
17	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:143501600-143516400	Strong transcription	Liver	Liver
19	chr6:143502200-143517000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:143504800-143521800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:143505800-143515800	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:143506600-143518400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:143506800-143516600	Weak transcription	Left Ventricle	heart
25	chr6:143507000-143517600	Weak transcription	Colonic Mucosa	Colon
26	chr6:143509000-143516800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:143509000-143518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:143509600-143516600	Weak transcription	Ovary	ovary
29	chr6:143509600-143517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:143509600-143517800	Weak transcription	Fetal Lung	lung
31	chr6:143509600-143518000	Weak transcription	NH-A	brain
32	chr6:143509600-143523200	Weak transcription	Adipose Nuclei	Adipose
33	chr6:143509600-143524400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:143509800-143519800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:143509800-143523800	Weak transcription	Aorta	Aorta
36	chr6:143510400-143515800	Weak transcription	Fetal Stomach	stomach
37	chr6:143510400-143516200	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:143511400-143517400	Weak transcription	HepG2	liver
39	chr6:143511400-143518800	Weak transcription	Osteobl	bone
40	chr6:143511600-143518600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:143511800-143517800	Weak transcription	Fetal Intestine Large	intestine
42	chr6:143513000-143516000	Weak transcription	HUVEC	blood vessel
43	chr6:143513800-143520600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:143514200-143516600	Weak transcription	Fetal Intestine Small	intestine
45	chr6:143514200-143517400	Weak transcription	NHEK	skin
46	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:143514400-143545200	Weak transcription	HMEC	breast
48	chr6:143515000-143521000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:143515200-143516000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:143515400-143515800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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