Variant report

Variant	rs6935733
Chromosome Location	chr6:143582166-143582167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143578203..143580061-chr6:143580169..143582946,2	K562	blood:
2	chr6:143581976..143584706-chr6:143586889..143589875,2	MCF-7	breast:
3	chr6:143568655..143572983-chr6:143580340..143584023,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10080658	1.00[ASN][1000 genomes]
rs13437539	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072327	1.00[TSI][hapmap]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28537733	1.00[ASN][1000 genomes]
rs28846218	1.00[ASN][1000 genomes]
rs4467794	1.00[ASN][1000 genomes]
rs55790446	1.00[ASN][1000 genomes]
rs56827403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57184543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	1.00[ASN][1000 genomes]
rs59572336	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59940435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6570554	1.00[MEX][hapmap]
rs73594139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73594165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7771499	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9484726	1.00[ASN][1000 genomes]
rs9484727	1.00[ASN][1000 genomes]
rs9484732	1.00[ASN][1000 genomes]
rs9484734	1.00[ASN][1000 genomes]
rs9484738	1.00[ASN][1000 genomes]
rs9496514	1.00[ASN][1000 genomes]
rs9496536	1.00[MEX][hapmap]
rs9496544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496547	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496548	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496562	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496563	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496580	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496581	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496583	1.00[ASN][1000 genomes]
rs9496586	1.00[ASN][1000 genomes]
rs9496590	1.00[ASN][1000 genomes]
rs9496595	1.00[ASN][1000 genomes]
rs9496596	1.00[ASN][1000 genomes]
rs9496599	1.00[ASN][1000 genomes]
rs9496604	1.00[ASN][1000 genomes]
rs9496608	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6935733	AIG1	cis	multi-tissue	Pritchard

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
3	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
6	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143574400-143583000	Weak transcription	Liver	Liver
8	chr6:143576200-143585800	Weak transcription	Fetal Lung	lung
9	chr6:143579000-143585600	Weak transcription	Fetal Stomach	stomach
10	chr6:143579800-143589400	Weak transcription	Left Ventricle	heart
11	chr6:143581000-143585600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:143581600-143582200	Enhancers	NHEK	skin
13	chr6:143581600-143582400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:143581600-143582600	Enhancers	HMEC	breast
15	chr6:143581800-143582200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:143581800-143582200	Enhancers	NHDF-Ad	bronchial
17	chr6:143581800-143582200	Enhancers	Osteobl	bone
18	chr6:143581800-143582400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:143581800-143582400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:143581800-143582400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:143581800-143582600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:143582000-143582400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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