The 2.0 version of rSNPBase

Variant report

Variant rs56827403
Chromosome Location chr6:143583768-143583769
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:19 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143545400-143588800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr6:143569000-143592000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr6:143569200-143586600 Weak transcription Stomach Smooth Muscle stomach
4 chr6:143569600-143588600 Weak transcription Aorta Aorta
5 chr6:143570800-143609200 Weak transcription Fetal Intestine Large intestine
6 chr6:143576200-143585800 Weak transcription Fetal Lung lung
7 chr6:143579000-143585600 Weak transcription Fetal Stomach stomach
8 chr6:143579800-143589400 Weak transcription Left Ventricle heart
9 chr6:143581000-143585600 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr6:143582200-143586200 Weak transcription NHDF-Ad bronchial
11 chr6:143582400-143585600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr6:143582400-143587600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr6:143582400-143590000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr6:143582400-143591800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr6:143582600-143591200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr6:143582600-143591200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr6:143583000-143584000 Strong transcription Liver Liver
18 chr6:143583000-143584000 Enhancers Colon Smooth Muscle Colon
19 chr6:143583400-143606000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015