Variant report

Variant	rs9496562
Chromosome Location	chr6:143615336-143615337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143578191..143580326-chr6:143614788..143617612,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10080658	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437539	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072327	1.00[EUR][1000 genomes]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537733	1.00[ASN][1000 genomes]
rs4467794	1.00[ASN][1000 genomes]
rs55790446	1.00[ASN][1000 genomes]
rs56827403	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57184543	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59572336	1.00[ASN][1000 genomes]
rs59940435	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6935733	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73594139	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73594165	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7771499	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484726	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484727	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484732	1.00[ASN][1000 genomes]
rs9484734	1.00[ASN][1000 genomes]
rs9484738	1.00[ASN][1000 genomes]
rs9496544	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496547	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496548	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496563	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496564	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496579	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496581	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496583	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496586	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496590	1.00[ASN][1000 genomes]
rs9496595	1.00[ASN][1000 genomes]
rs9496596	1.00[ASN][1000 genomes]
rs9496599	1.00[ASN][1000 genomes]
rs9496604	1.00[ASN][1000 genomes]
rs9496608	1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143583800-143615400	Weak transcription	K562	blood
2	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143605600-143622000	Weak transcription	HepG2	liver
6	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
9	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
10	chr6:143608800-143619800	Weak transcription	HMEC	breast
11	chr6:143608800-143624200	Weak transcription	Ovary	ovary
12	chr6:143608800-143629400	Weak transcription	NHEK	skin
13	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
16	chr6:143611200-143616800	Strong transcription	Liver	Liver
17	chr6:143612200-143617000	Weak transcription	Lung	lung
18	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:143614600-143615400	Enhancers	HSMM	muscle
20	chr6:143614800-143615400	Enhancers	HSMMtube	muscle
21	chr6:143615000-143615600	Enhancers	Fetal Muscle Leg	muscle
22	chr6:143615200-143616400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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