Variant report

Variant	rs9496579
Chromosome Location	chr6:143629650-143629651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10080658	1.00[EUR][1000 genomes]
rs17072327	1.00[EUR][1000 genomes]
rs2146300	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59134343	1.00[EUR][1000 genomes]
rs59940435	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771499	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484727	1.00[EUR][1000 genomes]
rs9496562	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496563	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496564	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496580	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496581	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496583	1.00[EUR][1000 genomes]
rs9496586	1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143615400-143643400	Weak transcription	HSMM	muscle
2	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
3	chr6:143623200-143630200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143623200-143644600	Weak transcription	Liver	Liver
5	chr6:143629000-143630000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:143629200-143630000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr6:143629400-143630000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr6:143629400-143630000	Enhancers	NHEK	skin
9	chr6:143629400-143630400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:143629600-143630000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr6:143629600-143630000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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