Variant report

Variant	rs17072327
Chromosome Location	chr6:143548281-143548282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143380527..143382813-chr6:143547282..143549388,2	MCF-7	breast:
2	chr6:143267204..143268811-chr6:143547362..143549725,2	MCF-7	breast:
3	chr6:143547341..143549506-chr6:143558186..143560896,2	K562	blood:
4	chr6:143545126..143547256-chr6:143547619..143550136,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080658	1.00[EUR][1000 genomes]
rs17072293	1.00[MEX][hapmap]
rs17072305	1.00[MEX][hapmap]
rs2146300	1.00[EUR][1000 genomes]
rs59134343	1.00[EUR][1000 genomes]
rs59940435	1.00[EUR][1000 genomes]
rs6935733	1.00[TSI][hapmap]
rs7771499	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9484727	1.00[EUR][1000 genomes]
rs9496562	1.00[EUR][1000 genomes]
rs9496563	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9496564	1.00[EUR][1000 genomes]
rs9496570	1.00[MEX][hapmap]
rs9496579	1.00[EUR][1000 genomes]
rs9496580	1.00[EUR][1000 genomes]
rs9496581	1.00[EUR][1000 genomes]
rs9496583	1.00[EUR][1000 genomes]
rs9496584	1.00[MEX][hapmap]
rs9496586	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275228	chr6:143539833-143549921	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143535000-143549600	Weak transcription	Lung	lung
4	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
6	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:143544400-143554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:143545200-143548400	Enhancers	HMEC	breast
9	chr6:143545400-143551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:143545400-143551400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:143545400-143554000	Weak transcription	Fetal Brain Male	brain
12	chr6:143545400-143557400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:143545600-143548800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143545600-143549400	Weak transcription	Liver	Liver
16	chr6:143545600-143549400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:143545600-143551600	Weak transcription	Fetal Lung	lung
18	chr6:143545600-143552000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:143545600-143554200	Weak transcription	Ovary	ovary
20	chr6:143545600-143557200	Weak transcription	Left Ventricle	heart
21	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
22	chr6:143546000-143576200	Weak transcription	HepG2	liver
23	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:143546400-143550000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:143546400-143554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:143547000-143557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:143547800-143558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:143548000-143559400	Weak transcription	NHEK	skin
29	chr6:143548200-143549000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:143548200-143549800	Enhancers	K562	blood

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