Variant report

Variant	rs17072293
Chromosome Location	chr6:143523262-143523263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143522707..143524777-chr6:143525389..143527804,2	K562	blood:
2	chr6:143515436..143519922-chr6:143520164..143527026,9	K562	blood:
3	chr6:143522271..143525244-chr6:143525737..143528206,4	K562	blood:

rs_ID	r²[population]
rs17072305	1.00[MEX][hapmap]
rs17072314	0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17072327	1.00[MEX][hapmap]
rs7752166	0.81[YRI][hapmap]
rs9390067	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9390069	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs9403464	0.81[YRI][hapmap]
rs9496570	1.00[MEX][hapmap]
rs9496584	1.00[MEX][hapmap]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143479600-143534600	Weak transcription	Gastric	stomach
3	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:143499200-143525400	Weak transcription	Esophagus	oesophagus
5	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:143509600-143524400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:143509800-143523800	Weak transcription	Aorta	Aorta
10	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:143514400-143545200	Weak transcription	HMEC	breast
12	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:143516400-143525600	Weak transcription	Liver	Liver
14	chr6:143516800-143525400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143517200-143523800	Weak transcription	Ovary	ovary
16	chr6:143517200-143523800	Weak transcription	Right Atrium	heart
17	chr6:143517200-143528200	Weak transcription	Psoas Muscle	Psoas
18	chr6:143517400-143525800	Weak transcription	Fetal Stomach	stomach
19	chr6:143517800-143525200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:143518000-143524800	Weak transcription	HepG2	liver
21	chr6:143518200-143525200	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143518400-143525000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:143519000-143525200	Weak transcription	HSMM	muscle
24	chr6:143520000-143523600	Weak transcription	Left Ventricle	heart
25	chr6:143520000-143525400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:143520000-143527200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:143521000-143526400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:143522000-143524600	Genic enhancers	K562	blood
30	chr6:143522800-143526000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:143523200-143523800	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:143523200-143524200	Enhancers	Adipose Nuclei	Adipose

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