Variant report

Variant	rs7752166
Chromosome Location	chr6:143530802-143530803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143528712..143531320-chr6:143533840..143537252,3	K562	blood:
2	chr6:143529611..143531960-chr6:143533791..143536418,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17072293	0.81[YRI][hapmap]
rs17072314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17591064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17591162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28446521	1.00[ASN][1000 genomes]
rs28525292	1.00[ASN][1000 genomes]
rs9321894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373379	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390063	0.85[ASN][1000 genomes]
rs9390064	0.88[ASN][1000 genomes]
rs9390067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs9390069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs9399428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9399429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403459	1.00[ASN][1000 genomes]
rs9403462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403464	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143479600-143534600	Weak transcription	Gastric	stomach
2	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:143514400-143545200	Weak transcription	HMEC	breast
7	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:143524400-143535200	Weak transcription	Right Atrium	heart
10	chr6:143524600-143531200	Strong transcription	K562	blood
11	chr6:143525600-143533600	Weak transcription	Aorta	Aorta
12	chr6:143525600-143534800	Weak transcription	Left Ventricle	heart
13	chr6:143525600-143544200	Weak transcription	HepG2	liver
14	chr6:143525800-143534000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:143525800-143534600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:143527200-143534600	Weak transcription	Fetal Lung	lung
18	chr6:143527400-143534600	Weak transcription	Fetal Kidney	kidney
19	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:143527800-143534600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:143528400-143533400	Weak transcription	Fetal Heart	heart
23	chr6:143528800-143536400	Weak transcription	Psoas Muscle	Psoas
24	chr6:143529000-143531800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:143529200-143534600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:143530400-143531200	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr6:143530600-143534600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links