Variant report

Variant	rs17591064
Chromosome Location	chr6:143513789-143513790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143511746..143514380-chr6:143555820..143557845,2	K562	blood:
2	chr6:143497222..143499079-chr6:143512778..143515130,2	K562	blood:
3	chr6:143496807..143499079-chr6:143513630..143516083,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17072314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17591162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28446521	1.00[ASN][1000 genomes]
rs28525292	1.00[ASN][1000 genomes]
rs7752166	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9321894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373379	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390063	0.85[ASN][1000 genomes]
rs9390064	0.88[ASN][1000 genomes]
rs9390067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390069	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9399429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403459	1.00[ASN][1000 genomes]
rs9403462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403464	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:143479600-143534600	Weak transcription	Gastric	stomach
4	chr6:143484400-143519800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:143487000-143516600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:143487600-143518000	Weak transcription	Fetal Kidney	kidney
7	chr6:143497400-143518600	Weak transcription	Pancreas	Pancrea
8	chr6:143497800-143522800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:143498000-143517800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:143499200-143525400	Weak transcription	Esophagus	oesophagus
12	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143499400-143516800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:143499400-143520800	Weak transcription	Lung	lung
15	chr6:143500400-143515800	Strong transcription	K562	blood
16	chr6:143501400-143516600	Weak transcription	Psoas Muscle	Psoas
17	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:143501600-143516400	Strong transcription	Liver	Liver
19	chr6:143502200-143517000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:143504800-143521800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:143505400-143513800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:143505800-143515800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:143506600-143518400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:143506800-143516600	Weak transcription	Left Ventricle	heart
26	chr6:143507000-143517600	Weak transcription	Colonic Mucosa	Colon
27	chr6:143509000-143516800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:143509000-143518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:143509600-143516600	Weak transcription	Ovary	ovary
30	chr6:143509600-143517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:143509600-143517800	Weak transcription	Fetal Lung	lung
32	chr6:143509600-143518000	Weak transcription	NH-A	brain
33	chr6:143509600-143523200	Weak transcription	Adipose Nuclei	Adipose
34	chr6:143509600-143524400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:143509800-143519800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:143509800-143523800	Weak transcription	Aorta	Aorta
37	chr6:143510000-143514000	Weak transcription	HMEC	breast
38	chr6:143510400-143515800	Weak transcription	Fetal Stomach	stomach
39	chr6:143510400-143516200	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:143511400-143517400	Weak transcription	HepG2	liver
41	chr6:143511400-143518800	Weak transcription	Osteobl	bone
42	chr6:143511600-143518600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:143511800-143517800	Weak transcription	Fetal Intestine Large	intestine
44	chr6:143512200-143514000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:143512800-143514200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:143512800-143514200	Enhancers	NHEK	skin
47	chr6:143513000-143516000	Weak transcription	HUVEC	blood vessel
48	chr6:143513200-143514200	Strong transcription	Fetal Intestine Small	intestine
49	chr6:143513400-143514400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:143513600-143515400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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