Variant report

Variant	rs9403462
Chromosome Location	chr6:143517572-143517573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143515015..143517690-chr6:143543085..143544617,2	K562	blood:
2	chr6:143515436..143519922-chr6:143520164..143527026,9	K562	blood:
3	chr6:143516988..143519782-chr6:143599949..143602747,2	K562	blood:
4	chr6:143367740..143370154-chr6:143514749..143517597,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17072288	0.85[GIH][hapmap]
rs17072314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17591064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17591162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17629061	0.85[GIH][hapmap]
rs28446521	1.00[ASN][1000 genomes]
rs28525292	1.00[ASN][1000 genomes]
rs7752166	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9321894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373379	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386026	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390063	0.85[ASN][1000 genomes]
rs9390064	0.88[ASN][1000 genomes]
rs9390067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390069	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9399429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403454	0.85[GIH][hapmap]
rs9403457	0.85[GIH][hapmap]
rs9403459	1.00[ASN][1000 genomes]
rs9403464	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143479600-143534600	Weak transcription	Gastric	stomach
3	chr6:143484400-143519800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:143487600-143518000	Weak transcription	Fetal Kidney	kidney
5	chr6:143497400-143518600	Weak transcription	Pancreas	Pancrea
6	chr6:143497800-143522800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:143498000-143517800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:143499200-143525400	Weak transcription	Esophagus	oesophagus
10	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143499400-143520800	Weak transcription	Lung	lung
12	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:143504800-143521800	Weak transcription	Brain Substantia Nigra	brain
14	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:143506600-143518400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:143507000-143517600	Weak transcription	Colonic Mucosa	Colon
17	chr6:143509000-143518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:143509600-143517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:143509600-143517800	Weak transcription	Fetal Lung	lung
20	chr6:143509600-143518000	Weak transcription	NH-A	brain
21	chr6:143509600-143523200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:143509600-143524400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:143509800-143519800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:143509800-143523800	Weak transcription	Aorta	Aorta
25	chr6:143511400-143518800	Weak transcription	Osteobl	bone
26	chr6:143511600-143518600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:143511800-143517800	Weak transcription	Fetal Intestine Large	intestine
28	chr6:143513800-143520600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:143514400-143545200	Weak transcription	HMEC	breast
31	chr6:143515000-143521000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:143515800-143518800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:143515800-143520200	Genic enhancers	K562	blood
34	chr6:143516000-143518400	Enhancers	HUVEC	blood vessel
35	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:143516200-143517600	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:143516400-143525600	Weak transcription	Liver	Liver
38	chr6:143516600-143518800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:143516800-143519000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:143516800-143525400	Weak transcription	Fetal Intestine Small	intestine
41	chr6:143517000-143518800	Weak transcription	Right Ventricle	heart
42	chr6:143517000-143519600	Weak transcription	Left Ventricle	heart
43	chr6:143517200-143518600	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:143517200-143523800	Weak transcription	Ovary	ovary
45	chr6:143517200-143523800	Weak transcription	Right Atrium	heart
46	chr6:143517200-143528200	Weak transcription	Psoas Muscle	Psoas
47	chr6:143517400-143517600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:143517400-143518000	Enhancers	HepG2	liver
49	chr6:143517400-143525800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links