Variant report

Variant	rs17072288
Chromosome Location	chr6:143508908-143508909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143507451..143510189-chr6:143525522..143527663,2	K562	blood:
2	chr6:143508385..143510833-chr6:143533819..143535981,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10434868	1.00[CHB][hapmap]
rs10484581	1.00[JPT][hapmap]
rs10484582	1.00[JPT][hapmap]
rs10484583	1.00[JPT][hapmap]
rs11155280	1.00[CHB][hapmap]
rs12055523	1.00[JPT][hapmap]
rs12176429	1.00[JPT][hapmap]
rs1413625	1.00[CHB][hapmap]
rs17072255	1.00[CHB][hapmap]
rs17072283	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17590908	1.00[CHB][hapmap]
rs17591022	0.96[ASN][1000 genomes]
rs17629061	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4458714	1.00[JPT][hapmap]
rs4895604	1.00[JPT][hapmap]
rs4896625	1.00[JPT][hapmap]
rs6919707	1.00[CHB][hapmap]
rs6927915	1.00[CHB][hapmap]
rs6932032	1.00[JPT][hapmap]
rs6935786	1.00[CHB][hapmap]
rs6936376	1.00[CHB][hapmap]
rs7765576	1.00[JPT][hapmap]
rs7769247	1.00[JPT][hapmap]
rs7775541	1.00[CHB][hapmap]
rs9321893	1.00[CHB][hapmap]
rs9321895	1.00[JPT][hapmap]
rs9373375	1.00[CHB][hapmap]
rs9373376	0.96[ASN][1000 genomes]
rs9373377	0.96[ASN][1000 genomes]
rs9373382	1.00[JPT][hapmap]
rs9376724	1.00[CHB][hapmap]
rs9376725	1.00[CHB][hapmap]
rs9376727	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9376728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376732	1.00[JPT][hapmap]
rs9376733	1.00[JPT][hapmap]
rs9376734	1.00[JPT][hapmap]
rs9376735	1.00[JPT][hapmap]
rs9386018	1.00[CHB][hapmap]
rs9386020	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs9386023	1.00[CHB][hapmap]
rs9386026	0.85[GIH][hapmap]
rs9386028	1.00[JPT][hapmap]
rs9386029	1.00[JPT][hapmap]
rs9390051	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs9390052	1.00[CHB][hapmap]
rs9390056	1.00[CHB][hapmap]
rs9390057	1.00[CHB][hapmap]
rs9390058	1.00[CHB][hapmap]
rs9390059	1.00[CHB][hapmap]
rs9390061	0.96[ASN][1000 genomes]
rs9390062	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9390063	0.89[ASN][1000 genomes]
rs9390064	0.86[ASN][1000 genomes]
rs9390071	1.00[JPT][hapmap]
rs9399422	1.00[CHB][hapmap]
rs9399426	0.96[ASN][1000 genomes]
rs9399427	0.96[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap]
rs9403442	1.00[CHB][hapmap]
rs9403444	1.00[CHB][hapmap]
rs9403446	1.00[CHB][hapmap]
rs9403453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403454	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403457	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[ASN][1000 genomes]
rs9403462	0.85[GIH][hapmap]
rs9403464	0.85[GIH][hapmap]
rs9403465	1.00[JPT][hapmap]
rs9403467	1.00[JPT][hapmap]
rs9403469	1.00[JPT][hapmap]
rs9403471	1.00[JPT][hapmap]
rs9403472	1.00[JPT][hapmap]
rs9403474	1.00[JPT][hapmap]
rs9403476	1.00[JPT][hapmap]
rs9496530	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17072288	CENPL	trans	lymphoblastoid	seeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:143479600-143534600	Weak transcription	Gastric	stomach
5	chr6:143482400-143511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:143484400-143519800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:143485200-143509400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:143486000-143510400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:143487000-143516600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:143487600-143518000	Weak transcription	Fetal Kidney	kidney
11	chr6:143488400-143510400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:143495800-143509800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:143496000-143509400	Weak transcription	Right Ventricle	heart
14	chr6:143497400-143518600	Weak transcription	Pancreas	Pancrea
15	chr6:143497800-143522800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:143498000-143510200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:143498000-143511000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:143498000-143517800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:143498200-143509400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:143499200-143525400	Weak transcription	Esophagus	oesophagus
22	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:143499400-143516800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:143499400-143520800	Weak transcription	Lung	lung
25	chr6:143500400-143515800	Strong transcription	K562	blood
26	chr6:143501400-143516600	Weak transcription	Psoas Muscle	Psoas
27	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:143501600-143511000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:143501600-143516400	Strong transcription	Liver	Liver
30	chr6:143502200-143517000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:143504800-143521800	Weak transcription	Brain Substantia Nigra	brain
32	chr6:143505000-143512800	Weak transcription	NHEK	skin
33	chr6:143505200-143512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:143505400-143511400	Strong transcription	HepG2	liver
35	chr6:143505400-143511800	Strong transcription	Fetal Intestine Large	intestine
36	chr6:143505400-143513800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:143505800-143515800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:143506600-143518400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:143506800-143509200	Weak transcription	Adipose Nuclei	Adipose
41	chr6:143506800-143516600	Weak transcription	Left Ventricle	heart
42	chr6:143507000-143509400	Weak transcription	Aorta	Aorta
43	chr6:143507000-143510600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:143507000-143517600	Weak transcription	Colonic Mucosa	Colon
45	chr6:143507200-143511400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:143507400-143509200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:143507400-143509600	Weak transcription	Fetal Intestine Small	intestine
48	chr6:143507600-143509800	Enhancers	NHDF-Ad	bronchial
49	chr6:143507800-143509600	Enhancers	HSMM	muscle
50	chr6:143507800-143509600	Enhancers	NH-A	brain

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