Variant report

Variant	rs9376733
Chromosome Location	chr6:143550700-143550701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143549517..143552462-chr6:143560418..143563692,3	K562	blood:
2	chr6:143550057..143552766-chr6:143564478..143566582,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10484581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10484582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10484583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12055523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12055848	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12176429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes]
rs1593289	1.00[AFR][1000 genomes]
rs17072283	1.00[JPT][hapmap]
rs17072288	1.00[JPT][hapmap]
rs17072338	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072347	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072381	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17072390	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17072410	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17072450	1.00[AFR][1000 genomes]
rs17072501	1.00[AFR][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs17629061	1.00[JPT][hapmap]
rs2328475	1.00[AFR][1000 genomes]
rs4458714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4895604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4895608	1.00[AFR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes]
rs4896625	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896630	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs6932032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7452873	1.00[AFR][1000 genomes]
rs7765576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7767467	1.00[CHB][hapmap]
rs7769247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9321895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9321896	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9373380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9373382	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9373385	1.00[CHB][hapmap]
rs9376728	1.00[JPT][hapmap]
rs9376732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9376734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9376735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9376736	1.00[CHB][hapmap]
rs9386028	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9386029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9390062	1.00[JPT][hapmap]
rs9390071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9399431	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9399432	0.81[AMR][1000 genomes]
rs9403453	1.00[JPT][hapmap]
rs9403454	1.00[JPT][hapmap]
rs9403465	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403467	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9403470	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403471	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403472	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403474	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9403476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
5	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:143544400-143554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:143545400-143551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:143545400-143551400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:143545400-143554000	Weak transcription	Fetal Brain Male	brain
10	chr6:143545400-143557400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:143545600-143551600	Weak transcription	Fetal Lung	lung
13	chr6:143545600-143552000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:143545600-143554200	Weak transcription	Ovary	ovary
15	chr6:143545600-143557200	Weak transcription	Left Ventricle	heart
16	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
17	chr6:143546000-143576200	Weak transcription	HepG2	liver
18	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143546400-143554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:143547000-143557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:143547800-143558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:143548000-143559400	Weak transcription	NHEK	skin
23	chr6:143549400-143550800	Strong transcription	Liver	Liver
24	chr6:143549800-143552200	Weak transcription	Lung	lung
25	chr6:143550200-143550800	Strong transcription	K562	blood
26	chr6:143550200-143554000	Weak transcription	Fetal Intestine Small	intestine
27	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
28	chr6:143550600-143550800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links