Variant report

Variant	rs2328475
Chromosome Location	chr6:143696403-143696404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143695462..143698122-chr6:143769366..143771322,2	K562	blood:

Variant related genes	Relation type
ENSG00000223203	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10484581	1.00[AFR][1000 genomes]
rs10484582	1.00[AFR][1000 genomes]
rs10484583	1.00[AFR][1000 genomes]
rs12055523	1.00[AFR][1000 genomes]
rs12176429	1.00[AFR][1000 genomes]
rs1369235	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1593289	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072338	1.00[AFR][1000 genomes]
rs17072347	1.00[AFR][1000 genomes]
rs17072349	1.00[AFR][1000 genomes]
rs17072381	1.00[AFR][1000 genomes]
rs17072390	1.00[AFR][1000 genomes]
rs17072404	1.00[AFR][1000 genomes]
rs17072408	1.00[AFR][1000 genomes]
rs17072410	1.00[AFR][1000 genomes]
rs17072450	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072501	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs4458714	1.00[AFR][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes]
rs4895604	1.00[AFR][1000 genomes]
rs4895608	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs60284513	0.89[ASN][1000 genomes]
rs7452873	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321896	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9373380	1.00[AFR][1000 genomes]
rs9373382	1.00[AFR][1000 genomes]
rs9373383	1.00[AFR][1000 genomes]
rs9376732	1.00[AFR][1000 genomes]
rs9376733	1.00[AFR][1000 genomes]
rs9376734	1.00[AFR][1000 genomes]
rs9376735	1.00[AFR][1000 genomes]
rs9386028	1.00[AFR][1000 genomes]
rs9390071	1.00[AFR][1000 genomes]
rs9399431	1.00[AFR][1000 genomes]
rs9403465	1.00[AFR][1000 genomes]
rs9403467	1.00[AFR][1000 genomes]
rs9403469	1.00[AFR][1000 genomes]
rs9403470	1.00[AFR][1000 genomes]
rs9403471	1.00[AFR][1000 genomes]
rs9403472	1.00[AFR][1000 genomes]
rs9403473	1.00[AFR][1000 genomes]
rs9403474	1.00[AFR][1000 genomes]
rs9403476	1.00[AFR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143694200-143697000	Enhancers	GM12878-XiMat	blood

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