Variant report

Variant	rs17072347
Chromosome Location	chr6:143562568-143562569
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143549517..143552462-chr6:143560418..143563692,3	K562	blood:
2	chr6:143544038..143546858-chr6:143561031..143564027,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10484581	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10484582	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10484583	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12055523	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12055848	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12176429	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes]
rs1593289	1.00[AFR][1000 genomes]
rs17072338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072381	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072390	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072410	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072450	1.00[AFR][1000 genomes]
rs17072501	1.00[AFR][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs2328475	1.00[AFR][1000 genomes]
rs4458714	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4895604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895608	1.00[AFR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes]
rs4896625	0.96[AMR][1000 genomes]
rs4896630	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs6932032	0.96[ASN][1000 genomes]
rs7452873	1.00[AFR][1000 genomes]
rs7765576	0.89[ASN][1000 genomes]
rs7769247	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9321895	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321896	1.00[AFR][1000 genomes]
rs9373380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9376732	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376733	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376734	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9376735	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9386028	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9386029	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9390071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9399431	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9399432	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403465	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9403467	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9403469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403470	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403471	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403472	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403474	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403476	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9496541	0.96[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
5	chr6:143546000-143576200	Weak transcription	HepG2	liver
6	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
9	chr6:143556200-143565600	Weak transcription	HMEC	breast
10	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
11	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:143557800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:143557800-143567000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:143559600-143563800	Strong transcription	Liver	Liver
15	chr6:143559800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:143561400-143564000	Weak transcription	K562	blood
17	chr6:143561400-143564800	Weak transcription	NHEK	skin
18	chr6:143561600-143563600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:143562000-143562600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:143562000-143563000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:143562000-143563200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:143562000-143563400	Enhancers	Ovary	ovary
23	chr6:143562000-143563600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:143562000-143566200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:143562200-143562600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:143562200-143562600	Enhancers	Osteobl	bone
27	chr6:143562200-143563000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:143562200-143563000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:143562400-143562600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:143562400-143563800	Enhancers	Adipose Nuclei	Adipose

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