Variant report

Variant	rs9386029
Chromosome Location	chr6:143573680-143573681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10484581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10484582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10484583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12055523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12055848	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12176429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072283	1.00[JPT][hapmap]
rs17072288	1.00[JPT][hapmap]
rs17072338	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072347	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072349	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072381	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072390	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072404	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072408	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072410	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17629061	1.00[JPT][hapmap]
rs4458714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4895603	0.88[AMR][1000 genomes]
rs4895604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896625	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs4896630	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4896631	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6932032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7765576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7767467	1.00[CHB][hapmap]
rs7769247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9321895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321896	1.00[CHB][hapmap]
rs9373380	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9373383	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9373385	1.00[CHB][hapmap]
rs9376728	1.00[JPT][hapmap]
rs9376732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9376735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9376736	1.00[CHB][hapmap]
rs9386028	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9390062	1.00[JPT][hapmap]
rs9390071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9399431	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9399432	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403453	1.00[JPT][hapmap]
rs9403454	1.00[JPT][hapmap]
rs9403465	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs9403467	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs9403469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403470	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403472	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403473	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9496541	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981344	chr6:143566840-143579617	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143546000-143576200	Weak transcription	HepG2	liver
4	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
5	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
6	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:143562600-143574200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:143562600-143579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143563400-143577200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:143563400-143579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
12	chr6:143565200-143573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:143565200-143579400	Weak transcription	Ovary	ovary
14	chr6:143565600-143578200	Weak transcription	Esophagus	oesophagus
15	chr6:143566200-143574600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:143568000-143578000	Weak transcription	K562	blood
17	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
20	chr6:143570000-143581600	Weak transcription	NHEK	skin
21	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143571000-143573800	Weak transcription	Fetal Stomach	stomach
23	chr6:143571000-143579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:143571400-143573800	Weak transcription	Fetal Brain Female	brain
25	chr6:143571400-143575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:143571400-143575400	Weak transcription	Lung	lung
27	chr6:143571400-143581800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:143572800-143575800	Weak transcription	Fetal Intestine Small	intestine
29	chr6:143573200-143574000	Weak transcription	Liver	Liver

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