Variant report

Variant	rs17072410
Chromosome Location	chr6:143588795-143588796
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143586956..143589894-chr6:143593616..143595223,2	K562	blood:
2	chr6:143581976..143584706-chr6:143586889..143589875,2	MCF-7	breast:
3	chr6:143587249..143590033-chr6:143590685..143593410,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10484581	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10484582	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10484583	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12055523	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12055848	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12176429	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes]
rs1593289	1.00[AFR][1000 genomes]
rs17072338	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072347	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072349	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072381	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072390	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072450	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17072501	1.00[AFR][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs2328475	1.00[AFR][1000 genomes]
rs4458714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4895604	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4895608	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes]
rs4896625	0.81[AMR][1000 genomes]
rs4896630	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs6932032	0.85[ASN][1000 genomes]
rs7452873	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7765576	1.00[ASN][1000 genomes]
rs7769247	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9321895	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9321896	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9373380	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9373382	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9376732	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9376733	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9376734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9376735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9386028	1.00[AFR][1000 genomes]
rs9386029	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9390071	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9399431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9399432	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403465	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9403467	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9403469	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403470	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496541	0.85[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:143579800-143589400	Weak transcription	Left Ventricle	heart
5	chr6:143582400-143590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143582400-143591800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:143582600-143591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:143582600-143591200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:143583800-143588800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:143583800-143615400	Weak transcription	K562	blood
12	chr6:143585800-143592000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:143586800-143591200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:143586800-143592000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:143587000-143590000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:143587000-143591400	Weak transcription	Fetal Lung	lung
17	chr6:143587000-143592000	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:143587000-143592000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:143587200-143588800	Weak transcription	Fetal Stomach	stomach
20	chr6:143587200-143589200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:143587200-143590800	Weak transcription	NHDF-Ad	bronchial
22	chr6:143587200-143591800	Weak transcription	Ovary	ovary
23	chr6:143587400-143591800	Weak transcription	Fetal Brain Male	brain
24	chr6:143587400-143592000	Weak transcription	HSMM	muscle
25	chr6:143587600-143589000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:143588200-143589000	Genic enhancers	Liver	Liver
27	chr6:143588400-143589600	Enhancers	Fetal Heart	heart
28	chr6:143588400-143590600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:143588600-143589000	Enhancers	Aorta	Aorta

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