Variant report

Variant	rs9321896
Chromosome Location	chr6:143603749-143603750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143603471..143605267-chr6:143607615..143610028,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10484581	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs10484582	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs10484583	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12055523	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12176429	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs1369235	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1593289	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17072338	1.00[AFR][1000 genomes]
rs17072347	1.00[AFR][1000 genomes]
rs17072349	1.00[AFR][1000 genomes]
rs17072381	1.00[AFR][1000 genomes]
rs17072390	1.00[AFR][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17072410	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17072450	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs17072501	1.00[AFR][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs2328475	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4458714	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes]
rs4895604	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs4895608	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes]
rs4896631	1.00[AFR][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs60284513	0.83[ASN][1000 genomes]
rs6932032	1.00[CHB][hapmap]
rs7452873	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs7765576	1.00[CHB][hapmap]
rs7767467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7769247	1.00[CHB][hapmap]
rs9321895	1.00[CHB][hapmap]
rs9373380	1.00[AFR][1000 genomes]
rs9373382	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9373385	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376732	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9376733	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9376734	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9376735	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9376736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376738	1.00[ASN][1000 genomes]
rs9386028	1.00[AFR][1000 genomes]
rs9386029	1.00[CHB][hapmap]
rs9390071	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9399431	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9399432	0.84[AMR][1000 genomes]
rs9403465	1.00[AFR][1000 genomes]
rs9403467	1.00[AFR][1000 genomes]
rs9403469	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9403470	1.00[AFR][1000 genomes]
rs9403471	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9403472	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9403474	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9403476	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143583800-143615400	Weak transcription	K562	blood
4	chr6:143589000-143607400	Weak transcription	Aorta	Aorta
5	chr6:143591400-143605200	Weak transcription	Liver	Liver
6	chr6:143592200-143605600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:143593200-143606800	Weak transcription	NHEK	skin
8	chr6:143593400-143607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143595400-143605400	Weak transcription	HepG2	liver
10	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
11	chr6:143600600-143609200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:143603000-143611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:143603200-143605600	Weak transcription	HMEC	breast
14	chr6:143603200-143606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143603200-143607000	Weak transcription	Fetal Heart	heart
16	chr6:143603200-143609600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:143603600-143604000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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