Variant report

Variant	rs60284513
Chromosome Location	chr6:143619466-143619467
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143381231..143383097-chr6:143619109..143620649,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1369235	1.00[ASN][1000 genomes]
rs1424924	0.89[ASN][1000 genomes]
rs1593289	0.89[ASN][1000 genomes]
rs17072423	1.00[EUR][1000 genomes]
rs17072450	0.89[ASN][1000 genomes]
rs2328475	0.89[ASN][1000 genomes]
rs55784672	1.00[EUR][1000 genomes]
rs57521514	1.00[EUR][1000 genomes]
rs57840309	1.00[EUR][1000 genomes]
rs58289411	1.00[EUR][1000 genomes]
rs58636117	1.00[EUR][1000 genomes]
rs59145715	1.00[EUR][1000 genomes]
rs59873606	1.00[EUR][1000 genomes]
rs61094753	1.00[EUR][1000 genomes]
rs61523637	1.00[EUR][1000 genomes]
rs6935548	1.00[EUR][1000 genomes]
rs73781130	1.00[EUR][1000 genomes]
rs7452873	0.89[ASN][1000 genomes]
rs9321896	0.83[ASN][1000 genomes]
rs9373385	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376736	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376738	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9484729	1.00[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143605600-143622000	Weak transcription	HepG2	liver
4	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
7	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
8	chr6:143608800-143619800	Weak transcription	HMEC	breast
9	chr6:143608800-143624200	Weak transcription	Ovary	ovary
10	chr6:143608800-143629400	Weak transcription	NHEK	skin
11	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
14	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143615400-143643400	Weak transcription	HSMM	muscle
16	chr6:143616800-143620200	Weak transcription	Liver	Liver
17	chr6:143616800-143624400	Weak transcription	K562	blood
18	chr6:143618400-143619800	Enhancers	Fetal Brain Male	brain
19	chr6:143618600-143619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:143618600-143620600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
22	chr6:143619200-143620200	Enhancers	Fetal Brain Female	brain
23	chr6:143619200-143621400	Enhancers	Fetal Heart	heart

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