Variant report

Variant	rs57521514
Chromosome Location	chr6:143622878-143622879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17072423	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55784672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55975141	0.90[AMR][1000 genomes]
rs57840309	1.00[EUR][1000 genomes]
rs58289411	1.00[EUR][1000 genomes]
rs58636117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59145715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59873606	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60284513	1.00[EUR][1000 genomes]
rs61094753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61523637	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935548	1.00[EUR][1000 genomes]
rs73781130	1.00[EUR][1000 genomes]
rs9373385	1.00[EUR][1000 genomes]
rs9376736	1.00[EUR][1000 genomes]
rs9376738	1.00[EUR][1000 genomes]
rs9484729	1.00[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
2	chr6:143608800-143624200	Weak transcription	Ovary	ovary
3	chr6:143608800-143629400	Weak transcription	NHEK	skin
4	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:143615400-143643400	Weak transcription	HSMM	muscle
7	chr6:143616800-143624400	Weak transcription	K562	blood
8	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
9	chr6:143619600-143623600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:143620600-143629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143621200-143624200	Weak transcription	Left Ventricle	heart
12	chr6:143621200-143629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:143622400-143623000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:143622400-143623200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:143622400-143623200	Strong transcription	Liver	Liver
16	chr6:143622600-143629400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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