Variant report

Variant	rs59873606
Chromosome Location	chr6:143600720-143600721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17072423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55784672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55975141	0.90[AMR][1000 genomes]
rs57521514	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57840309	1.00[EUR][1000 genomes]
rs58289411	1.00[EUR][1000 genomes]
rs58636117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59145715	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60284513	1.00[EUR][1000 genomes]
rs61094753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61523637	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935548	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73781130	1.00[EUR][1000 genomes]
rs9373385	1.00[EUR][1000 genomes]
rs9376736	1.00[EUR][1000 genomes]
rs9376738	1.00[EUR][1000 genomes]
rs9484729	1.00[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143583800-143615400	Weak transcription	K562	blood
4	chr6:143589000-143607400	Weak transcription	Aorta	Aorta
5	chr6:143591400-143605200	Weak transcription	Liver	Liver
6	chr6:143592200-143605600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:143593200-143606800	Weak transcription	NHEK	skin
8	chr6:143593400-143607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143595400-143605400	Weak transcription	HepG2	liver
10	chr6:143595600-143602800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
12	chr6:143600600-143602200	Weak transcription	Fetal Heart	heart
13	chr6:143600600-143609200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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