Variant report

Variant	rs9373385
Chromosome Location	chr6:143611898-143611899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484581	1.00[CHB][hapmap]
rs10484582	1.00[CHB][hapmap]
rs10484583	1.00[CHB][hapmap]
rs12055523	1.00[CHB][hapmap]
rs12176429	1.00[CHB][hapmap]
rs1369235	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17072423	1.00[EUR][1000 genomes]
rs4458714	1.00[CHB][hapmap]
rs4895604	1.00[CHB][hapmap]
rs55784672	1.00[EUR][1000 genomes]
rs57521514	1.00[EUR][1000 genomes]
rs57840309	1.00[EUR][1000 genomes]
rs58289411	1.00[EUR][1000 genomes]
rs58636117	1.00[EUR][1000 genomes]
rs59145715	1.00[EUR][1000 genomes]
rs59873606	1.00[EUR][1000 genomes]
rs60284513	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61094753	1.00[EUR][1000 genomes]
rs61523637	1.00[EUR][1000 genomes]
rs6932032	1.00[CHB][hapmap]
rs6935548	1.00[EUR][1000 genomes]
rs73781130	1.00[EUR][1000 genomes]
rs7765576	1.00[CHB][hapmap]
rs7767467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7769247	1.00[CHB][hapmap]
rs9321895	1.00[CHB][hapmap]
rs9321896	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373382	1.00[CHB][hapmap]
rs9376732	1.00[CHB][hapmap]
rs9376733	1.00[CHB][hapmap]
rs9376735	1.00[CHB][hapmap]
rs9376736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386029	1.00[CHB][hapmap]
rs9390071	1.00[CHB][hapmap]
rs9403469	1.00[CHB][hapmap]
rs9403471	1.00[CHB][hapmap]
rs9403474	1.00[CHB][hapmap]
rs9403476	1.00[CHB][hapmap]
rs9484729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445490	chr6:143611617-143612080	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143583800-143615400	Weak transcription	K562	blood
2	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
6	chr6:143605600-143622000	Weak transcription	HepG2	liver
7	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
10	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
11	chr6:143608800-143612400	Weak transcription	Fetal Stomach	stomach
12	chr6:143608800-143619800	Weak transcription	HMEC	breast
13	chr6:143608800-143624200	Weak transcription	Ovary	ovary
14	chr6:143608800-143629400	Weak transcription	NHEK	skin
15	chr6:143609400-143614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143609600-143612400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:143610000-143613400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:143610000-143614200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143611200-143616800	Strong transcription	Liver	Liver
23	chr6:143611400-143612200	Enhancers	Lung	lung
24	chr6:143611400-143613800	Strong transcription	Fetal Intestine Small	intestine
25	chr6:143611600-143612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:143611600-143613800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links