Variant report

Variant	rs9390071
Chromosome Location	chr6:143561087-143561088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143558615..143561242-chr6:143564166..143566111,3	K562	blood:
2	chr6:143510674..143513205-chr6:143559904..143561973,2	K562	blood:
3	chr6:143549517..143552462-chr6:143560418..143563692,3	K562	blood:
4	chr6:143544038..143546858-chr6:143561031..143564027,2	K562	blood:
5	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10484581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10484582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10484583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12055523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12055848	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12176429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1369235	1.00[CHB][hapmap]
rs1424924	1.00[AFR][1000 genomes]
rs1593289	1.00[AFR][1000 genomes]
rs17072283	1.00[JPT][hapmap]
rs17072288	1.00[JPT][hapmap]
rs17072338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072381	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072390	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072410	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072450	1.00[AFR][1000 genomes]
rs17072501	1.00[AFR][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs17629061	1.00[JPT][hapmap]
rs2328475	1.00[AFR][1000 genomes]
rs4458714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4895604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895608	1.00[AFR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes]
rs4896625	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs4896630	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs6932032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7452873	1.00[AFR][1000 genomes]
rs7765576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7767467	1.00[CHB][hapmap]
rs7769247	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9321895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321896	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9373380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373382	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9373385	1.00[CHB][hapmap]
rs9376728	1.00[JPT][hapmap]
rs9376732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9376735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9376736	1.00[CHB][hapmap]
rs9386028	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9386029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9390062	1.00[JPT][hapmap]
rs9399431	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9399432	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403453	1.00[JPT][hapmap]
rs9403454	1.00[JPT][hapmap]
rs9403465	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9403467	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9403469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403470	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403471	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403472	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403474	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9496541	0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
5	chr6:143546000-143576200	Weak transcription	HepG2	liver
6	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
9	chr6:143555400-143562000	Weak transcription	Ovary	ovary
10	chr6:143556200-143565600	Weak transcription	HMEC	breast
11	chr6:143557600-143561200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
13	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:143557800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143557800-143567000	Weak transcription	Fetal Intestine Small	intestine
16	chr6:143558000-143561600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:143558000-143562000	Weak transcription	NHDF-Ad	bronchial
18	chr6:143558800-143561200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:143559000-143562400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:143559200-143562000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:143559400-143561400	Strong transcription	K562	blood
22	chr6:143559400-143561400	Strong transcription	NHEK	skin
23	chr6:143559600-143563800	Strong transcription	Liver	Liver
24	chr6:143559800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:143560400-143562000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:143560800-143562000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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