Variant report

Variant	rs9403454
Chromosome Location	chr6:143484200-143484201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143392521..143394275-chr6:143483305..143485747,2	K562	blood:
2	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

rs_ID	r²[population]
rs10434868	1.00[CHB][hapmap]
rs10484581	1.00[JPT][hapmap]
rs10484582	1.00[JPT][hapmap]
rs10484583	1.00[JPT][hapmap]
rs11155280	1.00[CHB][hapmap]
rs12055523	1.00[JPT][hapmap]
rs12176429	1.00[JPT][hapmap]
rs1413625	1.00[CHB][hapmap]
rs17072255	1.00[CHB][hapmap]
rs17072283	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17072288	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17590908	1.00[CHB][hapmap]
rs17591022	1.00[ASN][1000 genomes]
rs17629061	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4458714	1.00[JPT][hapmap]
rs4895604	1.00[JPT][hapmap]
rs4896625	1.00[JPT][hapmap]
rs6919707	1.00[CHB][hapmap]
rs6927915	1.00[CHB][hapmap]
rs6932032	1.00[JPT][hapmap]
rs6935786	1.00[CHB][hapmap]
rs6936376	1.00[CHB][hapmap]
rs7765576	1.00[JPT][hapmap]
rs7769247	1.00[JPT][hapmap]
rs7775541	1.00[CHB][hapmap]
rs9321893	1.00[CHB][hapmap]
rs9321895	1.00[JPT][hapmap]
rs9373375	1.00[CHB][hapmap]
rs9373376	1.00[ASN][1000 genomes]
rs9373377	1.00[ASN][1000 genomes]
rs9373382	1.00[JPT][hapmap]
rs9376724	1.00[CHB][hapmap]
rs9376725	1.00[CHB][hapmap]
rs9376727	1.00[ASN][1000 genomes]
rs9376728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376732	1.00[JPT][hapmap]
rs9376733	1.00[JPT][hapmap]
rs9376734	1.00[JPT][hapmap]
rs9376735	1.00[JPT][hapmap]
rs9386018	1.00[CHB][hapmap]
rs9386020	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs9386023	1.00[CHB][hapmap]
rs9386026	0.85[GIH][hapmap]
rs9386028	1.00[JPT][hapmap]
rs9386029	1.00[JPT][hapmap]
rs9390051	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs9390052	1.00[CHB][hapmap]
rs9390056	1.00[CHB][hapmap]
rs9390057	1.00[CHB][hapmap]
rs9390058	1.00[CHB][hapmap]
rs9390059	1.00[CHB][hapmap]
rs9390061	1.00[ASN][1000 genomes]
rs9390062	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390063	0.86[ASN][1000 genomes]
rs9390064	0.83[ASN][1000 genomes]
rs9390071	1.00[JPT][hapmap]
rs9399422	1.00[CHB][hapmap]
rs9399426	1.00[ASN][1000 genomes]
rs9399427	1.00[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap]
rs9403442	1.00[CHB][hapmap]
rs9403444	1.00[CHB][hapmap]
rs9403446	1.00[CHB][hapmap]
rs9403453	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403457	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs9403462	0.85[GIH][hapmap]
rs9403464	0.85[GIH][hapmap]
rs9403465	1.00[JPT][hapmap]
rs9403467	1.00[JPT][hapmap]
rs9403469	1.00[JPT][hapmap]
rs9403471	1.00[JPT][hapmap]
rs9403472	1.00[JPT][hapmap]
rs9403474	1.00[JPT][hapmap]
rs9403476	1.00[JPT][hapmap]
rs9496530	1.00[CHB][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs9403454	CENPL	trans	lymphoblastoid	seeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
5	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
6	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
7	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:143458200-143486600	Weak transcription	Aorta	Aorta
9	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:143459200-143484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:143459600-143486600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:143468400-143484600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:143470200-143485800	Weak transcription	HepG2	liver
18	chr6:143471800-143486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143477000-143501200	Weak transcription	Right Atrium	heart
20	chr6:143479200-143488400	Weak transcription	HSMM	muscle
21	chr6:143479600-143485000	Weak transcription	Ovary	ovary
22	chr6:143479600-143496000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:143479600-143497200	Weak transcription	Esophagus	oesophagus
24	chr6:143479600-143499400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:143479600-143508600	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:143479600-143534600	Weak transcription	Gastric	stomach
27	chr6:143480000-143486600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:143480200-143501200	Weak transcription	Brain Angular Gyrus	brain
29	chr6:143480400-143485400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:143480400-143486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:143480400-143497200	Weak transcription	Lung	lung
32	chr6:143480600-143490400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:143481600-143488400	Weak transcription	NHEK	skin
34	chr6:143481800-143487200	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:143481800-143487600	Weak transcription	HMEC	breast
36	chr6:143481800-143497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:143481800-143497600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:143482200-143485800	Weak transcription	Osteobl	bone
39	chr6:143482200-143488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:143482200-143497200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:143482400-143511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:143482600-143488600	Weak transcription	NHDF-Ad	bronchial
43	chr6:143483000-143484400	Strong transcription	Liver	Liver
44	chr6:143483200-143487000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:143483200-143488400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:143483600-143484200	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr6:143483600-143484200	Enhancers	Fetal Heart	heart
48	chr6:143483600-143484200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr6:143483600-143484400	Strong transcription	Fetal Intestine Large	intestine
50	chr6:143483800-143484400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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