Variant report

Variant	rs7769247
Chromosome Location	chr6:143557255-143557256
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143511746..143514380-chr6:143555820..143557845,2	K562	blood:
2	chr6:143375950..143378205-chr6:143555143..143557355,2	K562	blood:
3	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10484581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10484582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10484583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12055523	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12055848	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12176429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072283	1.00[JPT][hapmap]
rs17072288	1.00[JPT][hapmap]
rs17072338	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072347	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072349	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072381	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072390	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17072404	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072408	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072410	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17629061	1.00[JPT][hapmap]
rs4458714	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4895603	0.96[AMR][1000 genomes]
rs4895604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4896625	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs4896630	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4896631	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6932032	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7765576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7767467	1.00[CHB][hapmap]
rs9321895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9321896	1.00[CHB][hapmap]
rs9373380	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373382	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9373383	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373385	1.00[CHB][hapmap]
rs9376728	1.00[JPT][hapmap]
rs9376732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9376733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9376734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9376735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376736	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs9386028	1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[AMR][1000 genomes]
rs9386029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9390062	1.00[JPT][hapmap]
rs9390071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9399431	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9399432	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9403453	1.00[JPT][hapmap]
rs9403454	1.00[JPT][hapmap]
rs9403465	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes]
rs9403467	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs9403469	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403470	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403472	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403473	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9403476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9496541	0.89[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143557400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
6	chr6:143546000-143576200	Weak transcription	HepG2	liver
7	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143547000-143557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:143547800-143558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:143548000-143559400	Weak transcription	NHEK	skin
11	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:143550800-143559400	Weak transcription	K562	blood
13	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
14	chr6:143554800-143558000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:143555000-143559400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:143555000-143559600	Weak transcription	Liver	Liver
17	chr6:143555400-143558000	Enhancers	NHDF-Ad	bronchial
18	chr6:143555400-143562000	Weak transcription	Ovary	ovary
19	chr6:143556000-143560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:143556200-143565600	Weak transcription	HMEC	breast
21	chr6:143556400-143557600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143556600-143557800	Strong transcription	Fetal Intestine Small	intestine
23	chr6:143556800-143557400	Weak transcription	Lung	lung
24	chr6:143557000-143557800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:143557200-143557600	Enhancers	Left Ventricle	heart
26	chr6:143557200-143557800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:143557200-143557800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:143557200-143557800	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:143557200-143558000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:143557200-143558000	Enhancers	Muscle Satellite Cultured Cells	--

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