Variant report

Variant	rs9373380
Chromosome Location	chr6:143549448-143549449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143267204..143268811-chr6:143547362..143549725,2	MCF-7	breast:
2	chr6:143547341..143549506-chr6:143558186..143560896,2	K562	blood:
3	chr6:143545126..143547256-chr6:143547619..143550136,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10484581	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10484582	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10484583	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12055523	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12055848	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12176429	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes]
rs1593289	1.00[AFR][1000 genomes]
rs17072338	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072347	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072381	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17072390	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17072410	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17072450	1.00[AFR][1000 genomes]
rs17072501	1.00[AFR][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs2328475	1.00[AFR][1000 genomes]
rs4458714	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4895604	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4895608	1.00[AFR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes]
rs4896625	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4896630	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs7452873	1.00[AFR][1000 genomes]
rs7769247	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9321895	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9321896	1.00[AFR][1000 genomes]
rs9373382	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9376732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9376733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9376734	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9376735	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9386028	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9386029	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9390071	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9399431	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9399432	0.81[AMR][1000 genomes]
rs9403465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9403467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9403469	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9403470	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403471	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403472	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403474	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9403476	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275228	chr6:143539833-143549921	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143535000-143549600	Weak transcription	Lung	lung
4	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
6	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:143544400-143554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:143545400-143551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:143545400-143551400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:143545400-143554000	Weak transcription	Fetal Brain Male	brain
11	chr6:143545400-143557400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:143545600-143551600	Weak transcription	Fetal Lung	lung
14	chr6:143545600-143552000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:143545600-143554200	Weak transcription	Ovary	ovary
16	chr6:143545600-143557200	Weak transcription	Left Ventricle	heart
17	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
18	chr6:143546000-143576200	Weak transcription	HepG2	liver
19	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:143546400-143550000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:143546400-143554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:143547000-143557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:143547800-143558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:143548000-143559400	Weak transcription	NHEK	skin
25	chr6:143548200-143549800	Enhancers	K562	blood
26	chr6:143548400-143550200	Weak transcription	HMEC	breast
27	chr6:143548800-143550200	Strong transcription	Fetal Intestine Small	intestine
28	chr6:143549000-143550600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:143549400-143549800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:143549400-143550200	Strong transcription	Fetal Intestine Large	intestine
31	chr6:143549400-143550800	Strong transcription	Liver	Liver

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