Variant report

Variant	rs7452873
Chromosome Location	chr6:143663370-143663371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143663326-143663485	A549	lung:	n/a	n/a
2	POLR2A	chr6:143663356-143663440	A549	lung:	n/a	n/a
3	POLR2A	chr6:143663359-143663459	A549	lung:	n/a	n/a
4	POLR2A	chr6:143663328-143663453	A549	lung:	n/a	n/a
5	POLR2A	chr6:143663334-143663473	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr6:143663264-143663424	MCF-7	breast:	n/a	n/a
7	POLR2A	chr6:143663346-143663431	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:143663318-143663441	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr6:143663354-143663425	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:143663339-143663389	BJ	skin:	n/a
2	chr6:143663339-143663389	AG09309	skin:	n/a
3	chr6:143663339-143663389	H1-hESC	embryonic stem cell:	embryo
4	chr6:143663339-143663389	PANC-1	pancreas:	n/a
5	chr6:143663339-143663389	SK-N-SH_RA	brain:	n/a
6	chr6:143663339-143663389	MCF-7	breast:	n/a
7	chr6:143663339-143663389	GM06990	blood:	n/a
8	chr6:143663339-143663389	NB4	blood:	n/a
9	chr6:143663339-143663389	HMEC	breast:	n/a
10	chr6:143663339-143663389	A549	lung:	n/a
11	chr6:143663339-143663389	MCF10A-Er-Src	breast:	n/a
12	chr6:143663339-143663389	HEEpiC	esophagus:	n/a
13	chr6:143663339-143663389	Hepatocyte	liver:	n/a
14	chr6:143663339-143663389	AG04450	lung:	fetal
15	chr6:143663339-143663389	GM12878	blood:	n/a
16	chr6:143663339-143663389	AG04449	skin:	fetal
17	chr6:143663339-143663389	ovcar-3	ovarian:	n/a
18	chr6:143663339-143663389	AG10803	skin:	n/a
19	chr6:143663339-143663389	HCPEpiC	choroid plexus:	n/a
20	chr6:143663339-143663389	SAEC	small airway:	n/a
21	chr6:143663339-143663389	HRPEpiC	eye:	n/a
22	chr6:143663339-143663389	SKMC	muscle:	n/a
23	chr6:143663339-143663389	PFSK-1	brain:	n/a
24	chr6:143663339-143663389	PrEC	prostate:	n/a
25	chr6:143663339-143663389	IMR90	lung:	fetal
26	chr6:143663339-143663389	HEK293	kidney:	embryo
27	chr6:143663339-143663389	LNCaP	prostate:	n/a
28	chr6:143663339-143663389	RPTEC	kidney:	n/a
29	chr6:143663339-143663389	HCT-116	colon:	n/a
30	chr6:143663339-143663389	U87	brain:	n/a
31	chr6:143663339-143663389	BE2_C	brain:	n/a
32	chr6:143663339-143663389	NT2-D1	testis:	n/a
33	chr6:143663339-143663389	HAEpiC	amniotic membrane:	n/a
34	chr6:143663339-143663389	HL-60	blood:	n/a
35	chr6:143663339-143663389	AoSMC	blood vessel:	n/a
36	chr6:143663339-143663389	K562	blood:	n/a
37	chr6:143663339-143663389	HUVEC	blood vessel:	n/a
38	chr6:143663339-143663389	Hela-S3	cervix:	n/a
39	chr6:143663339-143663389	HRE	kidney:	n/a
40	chr6:143663339-143663389	GM19239	blood:	n/a
41	chr6:143663339-143663389	HRCEpiC	kidney:	n/a
42	chr6:143663339-143663389	T-47D	breast:	n/a
43	chr6:143663339-143663389	HCM	heart:	n/a
44	chr6:143663339-143663389	SK-N-SH	brain:	n/a
45	chr6:143663339-143663389	AG09319	gingival:	n/a
46	chr6:143663339-143663389	HPAEpiC	pulmonary alveolar:	n/a
47	chr6:143663339-143663389	NH-A	brain:	n/a
48	chr6:143663339-143663389	NHDF-neo	bronchial:	n/a
49	chr6:143663339-143663389	CMK	blood:	n/a
50	chr6:143663339-143663389	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
ENSG00000217648	TF binding region
ENSG00000217648	CpG island

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10484581	1.00[AFR][1000 genomes]
rs10484582	1.00[AFR][1000 genomes]
rs10484583	1.00[AFR][1000 genomes]
rs12055523	1.00[AFR][1000 genomes]
rs12176429	1.00[AFR][1000 genomes]
rs1369235	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1424924	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1593289	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072338	1.00[AFR][1000 genomes]
rs17072347	1.00[AFR][1000 genomes]
rs17072349	1.00[AFR][1000 genomes]
rs17072381	1.00[AFR][1000 genomes]
rs17072390	1.00[AFR][1000 genomes]
rs17072404	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17072408	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17072410	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17072450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072501	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17072541	1.00[AFR][1000 genomes]
rs17072544	1.00[AFR][1000 genomes]
rs2328475	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4458714	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4482993	1.00[AFR][1000 genomes]
rs4895603	1.00[AFR][1000 genomes]
rs4895604	1.00[AFR][1000 genomes]
rs4895608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4895610	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4896631	1.00[AFR][1000 genomes]
rs4896654	1.00[AFR][1000 genomes]
rs60284513	0.89[ASN][1000 genomes]
rs9321896	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9373380	1.00[AFR][1000 genomes]
rs9373382	1.00[AFR][1000 genomes]
rs9373383	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9376732	1.00[AFR][1000 genomes]
rs9376733	1.00[AFR][1000 genomes]
rs9376734	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9376735	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9386028	1.00[AFR][1000 genomes]
rs9390071	1.00[AFR][1000 genomes]
rs9399431	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9399432	0.80[AMR][1000 genomes]
rs9403465	1.00[AFR][1000 genomes]
rs9403467	1.00[AFR][1000 genomes]
rs9403469	1.00[AFR][1000 genomes]
rs9403470	1.00[AFR][1000 genomes]
rs9403471	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9403472	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9403473	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9403474	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9403476	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
3	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:143652800-143664000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:143653000-143665600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:143653400-143663800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143653800-143663400	Weak transcription	Fetal Lung	lung
8	chr6:143654000-143672000	Weak transcription	Ovary	ovary
9	chr6:143654400-143667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:143654800-143663600	Weak transcription	Fetal Kidney	kidney
11	chr6:143655200-143665800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:143655400-143664400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:143655400-143666000	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:143655600-143667200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:143658200-143667200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:143658400-143670200	Weak transcription	NHDF-Ad	bronchial
17	chr6:143658600-143664000	Weak transcription	HSMM	muscle
18	chr6:143658600-143667200	Weak transcription	NH-A	brain
19	chr6:143658800-143669400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:143659400-143668400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:143660800-143667200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:143661000-143667200	Weak transcription	Osteobl	bone
23	chr6:143661000-143669400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:143661400-143667200	Weak transcription	HMEC	breast
25	chr6:143662800-143664400	Weak transcription	NHEK	skin
26	chr6:143662800-143665400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:143662800-143675600	Weak transcription	Liver	Liver
28	chr6:143663000-143667200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:143663000-143670800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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